miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24724 5' -54.9 NC_005264.1 + 44121 0.7 0.825783
Target:  5'- gGGCgGGAUAGCGGCGauuacgaGcGGGAGgGCAg -3'
miRNA:   3'- gCUG-CUUAUUGCUGCg------C-CCCUCgCGU- -5'
24724 5' -54.9 NC_005264.1 + 45150 0.68 0.89361
Target:  5'- aGGCGcc--ACGACGCGGaGGcaggagAGCGCGg -3'
miRNA:   3'- gCUGCuuauUGCUGCGCC-CC------UCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 45641 0.68 0.906323
Target:  5'- aGAUaacUGACGACGCGGcGGcuaggcgccaAGCGCAg -3'
miRNA:   3'- gCUGcuuAUUGCUGCGCC-CC----------UCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 47563 0.68 0.904475
Target:  5'- uGACGAaggccucgugccagAUAugGcuCGCGGGGAcGCGUu -3'
miRNA:   3'- gCUGCU--------------UAUugCu-GCGCCCCU-CGCGu -5'
24724 5' -54.9 NC_005264.1 + 47937 0.67 0.938869
Target:  5'- uCGACGGAgAACGGCuCGGcacGAGCGUg -3'
miRNA:   3'- -GCUGCUUaUUGCUGcGCCc--CUCGCGu -5'
24724 5' -54.9 NC_005264.1 + 48792 0.67 0.934033
Target:  5'- cCGGCGGGgcgAACGAccuCGCGuuucccacaGcGGAGCGCAu -3'
miRNA:   3'- -GCUGCUUa--UUGCU---GCGC---------C-CCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 49598 0.76 0.494991
Target:  5'- cCGGCGAcc-AgGACGaCGGGGGGCGCu -3'
miRNA:   3'- -GCUGCUuauUgCUGC-GCCCCUCGCGu -5'
24724 5' -54.9 NC_005264.1 + 51404 0.66 0.943472
Target:  5'- -cACGAaguacAUGGCGuACGcCGGGGAGcCGCc -3'
miRNA:   3'- gcUGCU-----UAUUGC-UGC-GCCCCUC-GCGu -5'
24724 5' -54.9 NC_005264.1 + 54250 0.66 0.955897
Target:  5'- aGGCugcuagAGCGcCGCaGGGAGCGCu -3'
miRNA:   3'- gCUGcuua--UUGCuGCGcCCCUCGCGu -5'
24724 5' -54.9 NC_005264.1 + 55549 0.71 0.781733
Target:  5'- gCGACGGaaGUAcUGGaGgGGGGAGCGCGg -3'
miRNA:   3'- -GCUGCU--UAUuGCUgCgCCCCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 63783 0.69 0.857953
Target:  5'- uCGACGGAUAAcacCGACuCGGGGGaggccccgcuuuGCGCu -3'
miRNA:   3'- -GCUGCUUAUU---GCUGcGCCCCU------------CGCGu -5'
24724 5' -54.9 NC_005264.1 + 66690 0.67 0.918112
Target:  5'- cCGGCGc----CGG-GCGGGGGGCGUAc -3'
miRNA:   3'- -GCUGCuuauuGCUgCGCCCCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 67002 0.67 0.912334
Target:  5'- aCGGCGAGUgcugccugGACGGaGCGGcGGccuuGCGCAg -3'
miRNA:   3'- -GCUGCUUA--------UUGCUgCGCC-CCu---CGCGU- -5'
24724 5' -54.9 NC_005264.1 + 71840 0.67 0.912334
Target:  5'- -cGCGAAUAACGACGCGucgcGGcGGCGg- -3'
miRNA:   3'- gcUGCUUAUUGCUGCGC----CCcUCGCgu -5'
24724 5' -54.9 NC_005264.1 + 74895 0.72 0.68886
Target:  5'- uCGACGAucguGCGAuuCGCguagaagccauuuacGGGGAGCGCGu -3'
miRNA:   3'- -GCUGCUuau-UGCU--GCG---------------CCCCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 75063 0.7 0.825783
Target:  5'- uCGGCgGAGUAGCuGACGCGGaGAG-GCAg -3'
miRNA:   3'- -GCUG-CUUAUUG-CUGCGCCcCUCgCGU- -5'
24724 5' -54.9 NC_005264.1 + 81656 0.68 0.900081
Target:  5'- uGAgGAGUuacgGACGGCgGCGGGGAGUc-- -3'
miRNA:   3'- gCUgCUUA----UUGCUG-CGCCCCUCGcgu -5'
24724 5' -54.9 NC_005264.1 + 87580 0.66 0.951983
Target:  5'- cCGACGAGgacgaacACGGCGCGuGGucGCGUu -3'
miRNA:   3'- -GCUGCUUau-----UGCUGCGC-CCcuCGCGu -5'
24724 5' -54.9 NC_005264.1 + 88238 0.66 0.951983
Target:  5'- aCGugGggUca-GGCGCGGGGucauCGUAg -3'
miRNA:   3'- -GCugCuuAuugCUGCGCCCCuc--GCGU- -5'
24724 5' -54.9 NC_005264.1 + 95446 0.67 0.934033
Target:  5'- uCGugGAAUAcgcuACcGCGCcGGcGGGCGCAg -3'
miRNA:   3'- -GCugCUUAU----UGcUGCGcCC-CUCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.