miRNA display CGI


Results 61 - 80 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24724 5' -54.9 NC_005264.1 + 96875 0.73 0.651489
Target:  5'- gGACGAGUAuugaagauggcaugGCGGCGCGcGaGGGCGCGg -3'
miRNA:   3'- gCUGCUUAU--------------UGCUGCGCcC-CUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 98100 0.66 0.955897
Target:  5'- gGGCGAuccuu-GCGCGGGGcacGGCGCc -3'
miRNA:   3'- gCUGCUuauugcUGCGCCCC---UCGCGu -5'
24724 5' -54.9 NC_005264.1 + 99150 0.69 0.842245
Target:  5'- gGACGAGaucGACGAcauCGCGGGGgacgucacucgcGGCGUAg -3'
miRNA:   3'- gCUGCUUa--UUGCU---GCGCCCC------------UCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 99999 0.69 0.84941
Target:  5'- gCGACGAAacGCGACGCGGaaauaaagaaGGccgcggcGGCGCu -3'
miRNA:   3'- -GCUGCUUauUGCUGCGCC----------CC-------UCGCGu -5'
24724 5' -54.9 NC_005264.1 + 100083 0.68 0.886913
Target:  5'- gGGCGuagcAUGGCGGcCGCGGGGcucAGCGaCGa -3'
miRNA:   3'- gCUGCu---UAUUGCU-GCGCCCC---UCGC-GU- -5'
24724 5' -54.9 NC_005264.1 + 100612 0.67 0.923655
Target:  5'- cCGACGAccccgaAGCGGC-CGcGGAGCGCGc -3'
miRNA:   3'- -GCUGCUua----UUGCUGcGCcCCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 100842 0.67 0.912334
Target:  5'- aCGGCGAGUucucccuCGACGCauGGGAccagGCGCGc -3'
miRNA:   3'- -GCUGCUUAuu-----GCUGCGc-CCCU----CGCGU- -5'
24724 5' -54.9 NC_005264.1 + 108146 0.69 0.834105
Target:  5'- uCGGgGGGccguCGAgccuCGCGGGGAGCGUAa -3'
miRNA:   3'- -GCUgCUUauu-GCU----GCGCCCCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 108428 0.68 0.886913
Target:  5'- -cGCGAacucGUAGCG-CGUGGGGAGauuaGCGg -3'
miRNA:   3'- gcUGCU----UAUUGCuGCGCCCCUCg---CGU- -5'
24724 5' -54.9 NC_005264.1 + 109618 0.76 0.485504
Target:  5'- -aGCaAAUGGCGugGgCGGGGGGCGCGa -3'
miRNA:   3'- gcUGcUUAUUGCugC-GCCCCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 113368 0.66 0.943472
Target:  5'- cCGuCGAAU-ACGGCGCGGGucaGGGUuauGCAg -3'
miRNA:   3'- -GCuGCUUAuUGCUGCGCCC---CUCG---CGU- -5'
24724 5' -54.9 NC_005264.1 + 114292 0.77 0.413044
Target:  5'- aCGACGAA-GGCGACG-GGGGcGCGCGg -3'
miRNA:   3'- -GCUGCUUaUUGCUGCgCCCCuCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 114653 0.69 0.872858
Target:  5'- aGACGGccGUAGCGucuccaugaaGCGGGG-GUGCAg -3'
miRNA:   3'- gCUGCU--UAUUGCug--------CGCCCCuCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 115246 0.68 0.906323
Target:  5'- gGGCGuGUcaAAUGGCcuGCGGGGAGUGUc -3'
miRNA:   3'- gCUGCuUA--UUGCUG--CGCCCCUCGCGu -5'
24724 5' -54.9 NC_005264.1 + 117829 0.68 0.879994
Target:  5'- aCGGguuCGAGgggaGGCGCGGcGGAGUGCGc -3'
miRNA:   3'- -GCU---GCUUauugCUGCGCC-CCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 120742 0.67 0.923111
Target:  5'- cCGGCGAcu-GCGACGaCaGGGAuaucccgGCGCAg -3'
miRNA:   3'- -GCUGCUuauUGCUGC-GcCCCU-------CGCGU- -5'
24724 5' -54.9 NC_005264.1 + 121526 0.69 0.834105
Target:  5'- uCGGCGGGccucGCGcgacuucaGCGCGGGGGGCGa- -3'
miRNA:   3'- -GCUGCUUau--UGC--------UGCGCCCCUCGCgu -5'
24724 5' -54.9 NC_005264.1 + 121554 0.75 0.553506
Target:  5'- gCGugGAAgu-CGACGCGGGcGGGcCGCu -3'
miRNA:   3'- -GCugCUUauuGCUGCGCCC-CUC-GCGu -5'
24724 5' -54.9 NC_005264.1 + 121907 0.73 0.674771
Target:  5'- uCGAcCGGGgcGCGGCgcgGCGGGGAGgGCGa -3'
miRNA:   3'- -GCU-GCUUauUGCUG---CGCCCCUCgCGU- -5'
24724 5' -54.9 NC_005264.1 + 122194 0.73 0.624062
Target:  5'- aCGGCGAcccuccgcGUcgcGACGGCGCGGGGaAGgGCu -3'
miRNA:   3'- -GCUGCU--------UA---UUGCUGCGCCCC-UCgCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.