miRNA display CGI


Results 81 - 100 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24724 5' -54.9 NC_005264.1 + 122408 0.68 0.879994
Target:  5'- gCGGCGAGggcuucucCGgaACGCGGGGucgguGCGCGg -3'
miRNA:   3'- -GCUGCUUauu-----GC--UGCGCCCCu----CGCGU- -5'
24724 5' -54.9 NC_005264.1 + 122626 0.69 0.872858
Target:  5'- gCGAaGAAUuacCGcCGCGGGGGGcCGCGa -3'
miRNA:   3'- -GCUgCUUAuu-GCuGCGCCCCUC-GCGU- -5'
24724 5' -54.9 NC_005264.1 + 122753 0.71 0.741169
Target:  5'- gCGACGAGgaaGACGACgaggaGCGGGGccucuugccgccggGGCGCu -3'
miRNA:   3'- -GCUGCUUa--UUGCUG-----CGCCCC--------------UCGCGu -5'
24724 5' -54.9 NC_005264.1 + 124295 0.69 0.842245
Target:  5'- aGGCGAGUcGCGGCcggacgGCGGGGcGGCGg- -3'
miRNA:   3'- gCUGCUUAuUGCUG------CGCCCC-UCGCgu -5'
24724 5' -54.9 NC_005264.1 + 125492 0.71 0.734382
Target:  5'- uCGGCGGcgcGGCGaACGuCGGGGuGCGCGg -3'
miRNA:   3'- -GCUGCUua-UUGC-UGC-GCCCCuCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 130847 0.7 0.824098
Target:  5'- uCGGCGcAUAACGGagcgaagcaggaGCGGGGAGCa-- -3'
miRNA:   3'- -GCUGCuUAUUGCUg-----------CGCCCCUCGcgu -5'
24724 5' -54.9 NC_005264.1 + 131598 0.71 0.734382
Target:  5'- uGugGAGggAGCGGCGCGcguGGGcGCGCGc -3'
miRNA:   3'- gCugCUUa-UUGCUGCGC---CCCuCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 132920 0.66 0.951983
Target:  5'- gCGGCGuaccucccUAGCGcCGaCGGGGuAGCGCc -3'
miRNA:   3'- -GCUGCuu------AUUGCuGC-GCCCC-UCGCGu -5'
24724 5' -54.9 NC_005264.1 + 133772 0.67 0.934033
Target:  5'- cCGACGAAgagcggcaGAUGACGauGGGGGC-CAa -3'
miRNA:   3'- -GCUGCUUa-------UUGCUGCgcCCCUCGcGU- -5'
24724 5' -54.9 NC_005264.1 + 136117 1.09 0.004348
Target:  5'- aCGACGAAUAACGACGCGGGGAGCGCAu -3'
miRNA:   3'- -GCUGCUUAUUGCUGCGCCCCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 142763 0.69 0.841439
Target:  5'- gGACGAGcUGACGgugcuugcucgcuACGCGGGGccGCGUg -3'
miRNA:   3'- gCUGCUU-AUUGC-------------UGCGCCCCu-CGCGu -5'
24724 5' -54.9 NC_005264.1 + 143602 0.67 0.912334
Target:  5'- -aACGAG-AAUGGCGCGGGGuacAGCGa- -3'
miRNA:   3'- gcUGCUUaUUGCUGCGCCCC---UCGCgu -5'
24724 5' -54.9 NC_005264.1 + 143873 0.69 0.857953
Target:  5'- aGACucuAUAAguCGGCGCGGcGGGCGCAa -3'
miRNA:   3'- gCUGcu-UAUU--GCUGCGCCcCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 145863 0.72 0.704849
Target:  5'- cCGGCGGAguuuGCGaACGgGGGuGGGUGCAa -3'
miRNA:   3'- -GCUGCUUau--UGC-UGCgCCC-CUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 150527 0.67 0.928962
Target:  5'- aCGAgGAAggucaGGCGGCuccaggcucggGCGGGGAGgGCc -3'
miRNA:   3'- -GCUgCUUa----UUGCUG-----------CGCCCCUCgCGu -5'
24724 5' -54.9 NC_005264.1 + 150986 0.71 0.753648
Target:  5'- -cGCGAGUGGCGGCGaCGGGccGCGUg -3'
miRNA:   3'- gcUGCUUAUUGCUGC-GCCCcuCGCGu -5'
24724 5' -54.9 NC_005264.1 + 151106 0.67 0.928962
Target:  5'- -uGCGAAag-UGACGUaGGGGGGCGCc -3'
miRNA:   3'- gcUGCUUauuGCUGCG-CCCCUCGCGu -5'
24724 5' -54.9 NC_005264.1 + 151859 0.71 0.781733
Target:  5'- cCGGCGGc-GAC-ACGUGGGGGGCGUc -3'
miRNA:   3'- -GCUGCUuaUUGcUGCGCCCCUCGCGu -5'
24724 5' -54.9 NC_005264.1 + 153272 0.68 0.879994
Target:  5'- aGACGAacccggcuucuGUAGCGagGCGCGGGcGAcGCGUc -3'
miRNA:   3'- gCUGCU-----------UAUUGC--UGCGCCC-CU-CGCGu -5'
24724 5' -54.9 NC_005264.1 + 154792 0.67 0.928962
Target:  5'- gCGACGuggGUGAaGAgGCGGaGGGCGCGg -3'
miRNA:   3'- -GCUGCu--UAUUgCUgCGCCcCUCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.