miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24724 5' -54.9 NC_005264.1 + 142763 0.69 0.841439
Target:  5'- gGACGAGcUGACGgugcuugcucgcuACGCGGGGccGCGUg -3'
miRNA:   3'- gCUGCUU-AUUGC-------------UGCGCCCCu-CGCGu -5'
24724 5' -54.9 NC_005264.1 + 136117 1.09 0.004348
Target:  5'- aCGACGAAUAACGACGCGGGGAGCGCAu -3'
miRNA:   3'- -GCUGCUUAUUGCUGCGCCCCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 133772 0.67 0.934033
Target:  5'- cCGACGAAgagcggcaGAUGACGauGGGGGC-CAa -3'
miRNA:   3'- -GCUGCUUa-------UUGCUGCgcCCCUCGcGU- -5'
24724 5' -54.9 NC_005264.1 + 132920 0.66 0.951983
Target:  5'- gCGGCGuaccucccUAGCGcCGaCGGGGuAGCGCc -3'
miRNA:   3'- -GCUGCuu------AUUGCuGC-GCCCC-UCGCGu -5'
24724 5' -54.9 NC_005264.1 + 131598 0.71 0.734382
Target:  5'- uGugGAGggAGCGGCGCGcguGGGcGCGCGc -3'
miRNA:   3'- gCugCUUa-UUGCUGCGC---CCCuCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 130847 0.7 0.824098
Target:  5'- uCGGCGcAUAACGGagcgaagcaggaGCGGGGAGCa-- -3'
miRNA:   3'- -GCUGCuUAUUGCUg-----------CGCCCCUCGcgu -5'
24724 5' -54.9 NC_005264.1 + 125492 0.71 0.734382
Target:  5'- uCGGCGGcgcGGCGaACGuCGGGGuGCGCGg -3'
miRNA:   3'- -GCUGCUua-UUGC-UGC-GCCCCuCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 124295 0.69 0.842245
Target:  5'- aGGCGAGUcGCGGCcggacgGCGGGGcGGCGg- -3'
miRNA:   3'- gCUGCUUAuUGCUG------CGCCCC-UCGCgu -5'
24724 5' -54.9 NC_005264.1 + 122753 0.71 0.741169
Target:  5'- gCGACGAGgaaGACGACgaggaGCGGGGccucuugccgccggGGCGCu -3'
miRNA:   3'- -GCUGCUUa--UUGCUG-----CGCCCC--------------UCGCGu -5'
24724 5' -54.9 NC_005264.1 + 122626 0.69 0.872858
Target:  5'- gCGAaGAAUuacCGcCGCGGGGGGcCGCGa -3'
miRNA:   3'- -GCUgCUUAuu-GCuGCGCCCCUC-GCGU- -5'
24724 5' -54.9 NC_005264.1 + 122408 0.68 0.879994
Target:  5'- gCGGCGAGggcuucucCGgaACGCGGGGucgguGCGCGg -3'
miRNA:   3'- -GCUGCUUauu-----GC--UGCGCCCCu----CGCGU- -5'
24724 5' -54.9 NC_005264.1 + 122194 0.73 0.624062
Target:  5'- aCGGCGAcccuccgcGUcgcGACGGCGCGGGGaAGgGCu -3'
miRNA:   3'- -GCUGCU--------UA---UUGCUGCGCCCC-UCgCGu -5'
24724 5' -54.9 NC_005264.1 + 121907 0.73 0.674771
Target:  5'- uCGAcCGGGgcGCGGCgcgGCGGGGAGgGCGa -3'
miRNA:   3'- -GCU-GCUUauUGCUG---CGCCCCUCgCGU- -5'
24724 5' -54.9 NC_005264.1 + 121554 0.75 0.553506
Target:  5'- gCGugGAAgu-CGACGCGGGcGGGcCGCu -3'
miRNA:   3'- -GCugCUUauuGCUGCGCCC-CUC-GCGu -5'
24724 5' -54.9 NC_005264.1 + 121526 0.69 0.834105
Target:  5'- uCGGCGGGccucGCGcgacuucaGCGCGGGGGGCGa- -3'
miRNA:   3'- -GCUGCUUau--UGC--------UGCGCCCCUCGCgu -5'
24724 5' -54.9 NC_005264.1 + 120742 0.67 0.923111
Target:  5'- cCGGCGAcu-GCGACGaCaGGGAuaucccgGCGCAg -3'
miRNA:   3'- -GCUGCUuauUGCUGC-GcCCCU-------CGCGU- -5'
24724 5' -54.9 NC_005264.1 + 117829 0.68 0.879994
Target:  5'- aCGGguuCGAGgggaGGCGCGGcGGAGUGCGc -3'
miRNA:   3'- -GCU---GCUUauugCUGCGCC-CCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 115246 0.68 0.906323
Target:  5'- gGGCGuGUcaAAUGGCcuGCGGGGAGUGUc -3'
miRNA:   3'- gCUGCuUA--UUGCUG--CGCCCCUCGCGu -5'
24724 5' -54.9 NC_005264.1 + 114653 0.69 0.872858
Target:  5'- aGACGGccGUAGCGucuccaugaaGCGGGG-GUGCAg -3'
miRNA:   3'- gCUGCU--UAUUGCug--------CGCCCCuCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 114292 0.77 0.413044
Target:  5'- aCGACGAA-GGCGACG-GGGGcGCGCGg -3'
miRNA:   3'- -GCUGCUUaUUGCUGCgCCCCuCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.