miRNA display CGI


Results 61 - 80 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24724 5' -54.9 NC_005264.1 + 63783 0.69 0.857953
Target:  5'- uCGACGGAUAAcacCGACuCGGGGGaggccccgcuuuGCGCu -3'
miRNA:   3'- -GCUGCUUAUU---GCUGcGCCCCU------------CGCGu -5'
24724 5' -54.9 NC_005264.1 + 55549 0.71 0.781733
Target:  5'- gCGACGGaaGUAcUGGaGgGGGGAGCGCGg -3'
miRNA:   3'- -GCUGCU--UAUuGCUgCgCCCCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 54250 0.66 0.955897
Target:  5'- aGGCugcuagAGCGcCGCaGGGAGCGCu -3'
miRNA:   3'- gCUGcuua--UUGCuGCGcCCCUCGCGu -5'
24724 5' -54.9 NC_005264.1 + 51404 0.66 0.943472
Target:  5'- -cACGAaguacAUGGCGuACGcCGGGGAGcCGCc -3'
miRNA:   3'- gcUGCU-----UAUUGC-UGC-GCCCCUC-GCGu -5'
24724 5' -54.9 NC_005264.1 + 49598 0.76 0.494991
Target:  5'- cCGGCGAcc-AgGACGaCGGGGGGCGCu -3'
miRNA:   3'- -GCUGCUuauUgCUGC-GCCCCUCGCGu -5'
24724 5' -54.9 NC_005264.1 + 48792 0.67 0.934033
Target:  5'- cCGGCGGGgcgAACGAccuCGCGuuucccacaGcGGAGCGCAu -3'
miRNA:   3'- -GCUGCUUa--UUGCU---GCGC---------C-CCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 47937 0.67 0.938869
Target:  5'- uCGACGGAgAACGGCuCGGcacGAGCGUg -3'
miRNA:   3'- -GCUGCUUaUUGCUGcGCCc--CUCGCGu -5'
24724 5' -54.9 NC_005264.1 + 47563 0.68 0.904475
Target:  5'- uGACGAaggccucgugccagAUAugGcuCGCGGGGAcGCGUu -3'
miRNA:   3'- gCUGCU--------------UAUugCu-GCGCCCCU-CGCGu -5'
24724 5' -54.9 NC_005264.1 + 45641 0.68 0.906323
Target:  5'- aGAUaacUGACGACGCGGcGGcuaggcgccaAGCGCAg -3'
miRNA:   3'- gCUGcuuAUUGCUGCGCC-CC----------UCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 45150 0.68 0.89361
Target:  5'- aGGCGcc--ACGACGCGGaGGcaggagAGCGCGg -3'
miRNA:   3'- gCUGCuuauUGCUGCGCC-CC------UCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 44121 0.7 0.825783
Target:  5'- gGGCgGGAUAGCGGCGauuacgaGcGGGAGgGCAg -3'
miRNA:   3'- gCUG-CUUAUUGCUGCg------C-CCCUCgCGU- -5'
24724 5' -54.9 NC_005264.1 + 43874 0.7 0.808628
Target:  5'- aGACGGA--ACGAgCGCGgcaaaGGGGGCGCc -3'
miRNA:   3'- gCUGCUUauUGCU-GCGC-----CCCUCGCGu -5'
24724 5' -54.9 NC_005264.1 + 43680 0.7 0.817289
Target:  5'- cCGGCGuuaaGGCGGcCGcCGGGGAGCGgGa -3'
miRNA:   3'- -GCUGCuua-UUGCU-GC-GCCCCUCGCgU- -5'
24724 5' -54.9 NC_005264.1 + 43146 0.69 0.857953
Target:  5'- aGcACGggUGgaGCGGggaGgGGGGGGCGCGu -3'
miRNA:   3'- gC-UGCuuAU--UGCUg--CgCCCCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 42380 0.67 0.928962
Target:  5'- gCGAucuuCGAGgcGACGugGCGGuGGAaauGCGCGa -3'
miRNA:   3'- -GCU----GCUUa-UUGCugCGCC-CCU---CGCGU- -5'
24724 5' -54.9 NC_005264.1 + 42278 0.71 0.781733
Target:  5'- cCGGCGcGGUcAACGcCGCGGGGccccaaaaaacGGCGCAg -3'
miRNA:   3'- -GCUGC-UUA-UUGCuGCGCCCC-----------UCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 41053 0.73 0.654532
Target:  5'- aGACGGu--ACGGCGCcgGGGGAcGCGCc -3'
miRNA:   3'- gCUGCUuauUGCUGCG--CCCCU-CGCGu -5'
24724 5' -54.9 NC_005264.1 + 40782 0.73 0.664664
Target:  5'- aGACGc--AGCGGCgcugcaaacuGCGGGGGGCGCu -3'
miRNA:   3'- gCUGCuuaUUGCUG----------CGCCCCUCGCGu -5'
24724 5' -54.9 NC_005264.1 + 39387 0.7 0.81643
Target:  5'- aGACG-AUGACGACGUcggcgaaGGGGGcacuGCGCu -3'
miRNA:   3'- gCUGCuUAUUGCUGCG-------CCCCU----CGCGu -5'
24724 5' -54.9 NC_005264.1 + 35962 0.72 0.724613
Target:  5'- cCGACG-AUGGCGAuuCGCcuggaGGGGGCGCGg -3'
miRNA:   3'- -GCUGCuUAUUGCU--GCGc----CCCUCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.