miRNA display CGI


Results 81 - 100 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24724 5' -54.9 NC_005264.1 + 35766 0.67 0.928962
Target:  5'- gCGACGuggGUGAaGAgGCGGaGGGCGCGg -3'
miRNA:   3'- -GCUGCu--UAUUgCUgCGCCcCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 34245 0.68 0.879994
Target:  5'- aGACGAacccggcuucuGUAGCGagGCGCGGGcGAcGCGUc -3'
miRNA:   3'- gCUGCU-----------UAUUGC--UGCGCCC-CU-CGCGu -5'
24724 5' -54.9 NC_005264.1 + 34013 0.75 0.563476
Target:  5'- aGACG-AUGACGACGCGGGG-GUa-- -3'
miRNA:   3'- gCUGCuUAUUGCUGCGCCCCuCGcgu -5'
24724 5' -54.9 NC_005264.1 + 32079 0.67 0.928962
Target:  5'- -uGCGAAag-UGACGUaGGGGGGCGCc -3'
miRNA:   3'- gcUGCUUauuGCUGCG-CCCCUCGCGu -5'
24724 5' -54.9 NC_005264.1 + 31959 0.71 0.753648
Target:  5'- -cGCGAGUGGCGGCGaCGGGccGCGUg -3'
miRNA:   3'- gcUGCUUAUUGCUGC-GCCCcuCGCGu -5'
24724 5' -54.9 NC_005264.1 + 31500 0.67 0.928962
Target:  5'- aCGAgGAAggucaGGCGGCuccaggcucggGCGGGGAGgGCc -3'
miRNA:   3'- -GCUgCUUa----UUGCUG-----------CGCCCCUCgCGu -5'
24724 5' -54.9 NC_005264.1 + 30103 0.69 0.857953
Target:  5'- -cGCGAGUcgaGAUGCGGGcGGCGCGg -3'
miRNA:   3'- gcUGCUUAuugCUGCGCCCcUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 28042 0.67 0.934033
Target:  5'- cCGGCGcgc-GCGACGCcGGGuaaaAGCGCGc -3'
miRNA:   3'- -GCUGCuuauUGCUGCGcCCC----UCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 27704 0.69 0.865509
Target:  5'- uGACGAcgGAUGuCGCGGGGcauaauucGGCGa- -3'
miRNA:   3'- gCUGCUuaUUGCuGCGCCCC--------UCGCgu -5'
24724 5' -54.9 NC_005264.1 + 25946 0.72 0.704849
Target:  5'- gCGACGAAgaugagGACGGCGCGGacGuGUGCAc -3'
miRNA:   3'- -GCUGCUUa-----UUGCUGCGCCc-CuCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 25909 0.73 0.634223
Target:  5'- aGGCGAAca--GAUgGCGGGGGGCGCu -3'
miRNA:   3'- gCUGCUUauugCUG-CGCCCCUCGCGu -5'
24724 5' -54.9 NC_005264.1 + 25618 0.72 0.684843
Target:  5'- aGACGAagAUGAUGACGCGGuuaagcuuaGGGGCGa- -3'
miRNA:   3'- gCUGCU--UAUUGCUGCGCC---------CCUCGCgu -5'
24724 5' -54.9 NC_005264.1 + 22754 0.69 0.872858
Target:  5'- gGGCGAagcgAUAGCGGCGgGcaaugaGGGGCGCGg -3'
miRNA:   3'- gCUGCU----UAUUGCUGCgCc-----CCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 20458 0.8 0.317836
Target:  5'- cCGGCGGAcAGCGGCGCGcauGGGAGgGCAu -3'
miRNA:   3'- -GCUGCUUaUUGCUGCGC---CCCUCgCGU- -5'
24724 5' -54.9 NC_005264.1 + 20243 0.67 0.928962
Target:  5'- uGACGggUGggcagggguuGCGGCGCggccucgcggaGGGGAccgucuGCGCGc -3'
miRNA:   3'- gCUGCuuAU----------UGCUGCG-----------CCCCU------CGCGU- -5'
24724 5' -54.9 NC_005264.1 + 19427 0.69 0.857953
Target:  5'- gCGcCGggUGugGcCGCGGGGcGCGgGu -3'
miRNA:   3'- -GCuGCuuAUugCuGCGCCCCuCGCgU- -5'
24724 5' -54.9 NC_005264.1 + 18626 0.7 0.808628
Target:  5'- -uGCGAaaGUGACGugGUGGGGuGcCGCc -3'
miRNA:   3'- gcUGCU--UAUUGCugCGCCCCuC-GCGu -5'
24724 5' -54.9 NC_005264.1 + 17276 0.66 0.955897
Target:  5'- -aACGGA-GGCGACGgGGcGGAGgGCu -3'
miRNA:   3'- gcUGCUUaUUGCUGCgCC-CCUCgCGu -5'
24724 5' -54.9 NC_005264.1 + 16562 0.7 0.79981
Target:  5'- -cGCGGugGGCGGCGcCGGGGcggcGGCGCAc -3'
miRNA:   3'- gcUGCUuaUUGCUGC-GCCCC----UCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 13964 0.68 0.879994
Target:  5'- gCGACGAGgagacgAGCGAgaCGCGGGGu-CGCc -3'
miRNA:   3'- -GCUGCUUa-----UUGCU--GCGCCCCucGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.