miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24724 5' -54.9 NC_005264.1 + 121526 0.69 0.834105
Target:  5'- uCGGCGGGccucGCGcgacuucaGCGCGGGGGGCGa- -3'
miRNA:   3'- -GCUGCUUau--UGC--------UGCGCCCCUCGCgu -5'
24724 5' -54.9 NC_005264.1 + 18626 0.7 0.808628
Target:  5'- -uGCGAaaGUGACGugGUGGGGuGcCGCc -3'
miRNA:   3'- gcUGCU--UAUUGCugCGCCCCuC-GCGu -5'
24724 5' -54.9 NC_005264.1 + 25618 0.72 0.684843
Target:  5'- aGACGAagAUGAUGACGCGGuuaagcuuaGGGGCGa- -3'
miRNA:   3'- gCUGCU--UAUUGCUGCGCC---------CCUCGCgu -5'
24724 5' -54.9 NC_005264.1 + 49598 0.76 0.494991
Target:  5'- cCGGCGAcc-AgGACGaCGGGGGGCGCu -3'
miRNA:   3'- -GCUGCUuauUgCUGC-GCCCCUCGCGu -5'
24724 5' -54.9 NC_005264.1 + 108428 0.68 0.886913
Target:  5'- -cGCGAacucGUAGCG-CGUGGGGAGauuaGCGg -3'
miRNA:   3'- gcUGCU----UAUUGCuGCGCCCCUCg---CGU- -5'
24724 5' -54.9 NC_005264.1 + 30103 0.69 0.857953
Target:  5'- -cGCGAGUcgaGAUGCGGGcGGCGCGg -3'
miRNA:   3'- gcUGCUUAuugCUGCGCCCcUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 161305 0.71 0.781733
Target:  5'- cCGGCGcGGUcAACGcCGCGGGGccccaaaaaacGGCGCAg -3'
miRNA:   3'- -GCUGC-UUA-UUGCuGCGCCCC-----------UCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 114292 0.77 0.413044
Target:  5'- aCGACGAA-GGCGACG-GGGGcGCGCGg -3'
miRNA:   3'- -GCUGCUUaUUGCUGCgCCCCuCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 19427 0.69 0.857953
Target:  5'- gCGcCGggUGugGcCGCGGGGcGCGgGu -3'
miRNA:   3'- -GCuGCuuAUugCuGCGCCCCuCGCgU- -5'
24724 5' -54.9 NC_005264.1 + 20458 0.8 0.317836
Target:  5'- cCGGCGGAcAGCGGCGCGcauGGGAGgGCAu -3'
miRNA:   3'- -GCUGCUUaUUGCUGCGC---CCCUCgCGU- -5'
24724 5' -54.9 NC_005264.1 + 16562 0.7 0.79981
Target:  5'- -cGCGGugGGCGGCGcCGGGGcggcGGCGCAc -3'
miRNA:   3'- gcUGCUuaUUGCUGC-GCCCC----UCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 124295 0.69 0.842245
Target:  5'- aGGCGAGUcGCGGCcggacgGCGGGGcGGCGg- -3'
miRNA:   3'- gCUGCUUAuUGCUG------CGCCCC-UCGCgu -5'
24724 5' -54.9 NC_005264.1 + 122753 0.71 0.741169
Target:  5'- gCGACGAGgaaGACGACgaggaGCGGGGccucuugccgccggGGCGCu -3'
miRNA:   3'- -GCUGCUUa--UUGCUG-----CGCCCC--------------UCGCGu -5'
24724 5' -54.9 NC_005264.1 + 25946 0.72 0.704849
Target:  5'- gCGACGAAgaugagGACGGCGCGGacGuGUGCAc -3'
miRNA:   3'- -GCUGCUUa-----UUGCUGCGCCc-CuCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 160080 0.73 0.654532
Target:  5'- aGACGGu--ACGGCGCcgGGGGAcGCGCc -3'
miRNA:   3'- gCUGCUuauUGCUGCG--CCCCU-CGCGu -5'
24724 5' -54.9 NC_005264.1 + 34013 0.75 0.563476
Target:  5'- aGACG-AUGACGACGCGGGG-GUa-- -3'
miRNA:   3'- gCUGCuUAUUGCUGCGCCCCuCGcgu -5'
24724 5' -54.9 NC_005264.1 + 3669 0.67 0.918112
Target:  5'- gGGCGAcUGGCauuGGUGCGGGGccuGGCGCGg -3'
miRNA:   3'- gCUGCUuAUUG---CUGCGCCCC---UCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 71840 0.67 0.912334
Target:  5'- -cGCGAAUAACGACGCGucgcGGcGGCGg- -3'
miRNA:   3'- gcUGCUUAUUGCUGCGC----CCcUCGCgu -5'
24724 5' -54.9 NC_005264.1 + 13964 0.68 0.879994
Target:  5'- gCGACGAGgagacgAGCGAgaCGCGGGGu-CGCc -3'
miRNA:   3'- -GCUGCUUa-----UUGCU--GCGCCCCucGCGu -5'
24724 5' -54.9 NC_005264.1 + 27704 0.69 0.865509
Target:  5'- uGACGAcgGAUGuCGCGGGGcauaauucGGCGa- -3'
miRNA:   3'- gCUGCUuaUUGCuGCGCCCC--------UCGCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.