Results 61 - 80 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24724 | 5' | -54.9 | NC_005264.1 | + | 109618 | 0.76 | 0.485504 |
Target: 5'- -aGCaAAUGGCGugGgCGGGGGGCGCGa -3' miRNA: 3'- gcUGcUUAUUGCugC-GCCCCUCGCGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 42278 | 0.71 | 0.781733 |
Target: 5'- cCGGCGcGGUcAACGcCGCGGGGccccaaaaaacGGCGCAg -3' miRNA: 3'- -GCUGC-UUA-UUGCuGCGCCCC-----------UCGCGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 151859 | 0.71 | 0.781733 |
Target: 5'- cCGGCGGc-GAC-ACGUGGGGGGCGUc -3' miRNA: 3'- -GCUGCUuaUUGcUGCGCCCCUCGCGu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 34245 | 0.68 | 0.879994 |
Target: 5'- aGACGAacccggcuucuGUAGCGagGCGCGGGcGAcGCGUc -3' miRNA: 3'- gCUGCU-----------UAUUGC--UGCGCCC-CU-CGCGu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 3599 | 0.69 | 0.872858 |
Target: 5'- gCGAaGAAUuacCGcCGCGGGGGGcCGCGa -3' miRNA: 3'- -GCUgCUUAuu-GCuGCGCCCCUC-GCGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 114653 | 0.69 | 0.872858 |
Target: 5'- aGACGGccGUAGCGucuccaugaaGCGGGG-GUGCAg -3' miRNA: 3'- gCUGCU--UAUUGCug--------CGCCCCuCGCGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 158970 | 0.69 | 0.872133 |
Target: 5'- aGACGGA----GACGUGGGGcagcccaauccccGGCGCAg -3' miRNA: 3'- gCUGCUUauugCUGCGCCCC-------------UCGCGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 154906 | 0.69 | 0.857953 |
Target: 5'- gCGGCcgugGACGACGCGuGGAcGCGCGc -3' miRNA: 3'- -GCUGcuuaUUGCUGCGCcCCU-CGCGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 63783 | 0.69 | 0.857953 |
Target: 5'- uCGACGGAUAAcacCGACuCGGGGGaggccccgcuuuGCGCu -3' miRNA: 3'- -GCUGCUUAUU---GCUGcGCCCCU------------CGCGu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 157692 | 0.71 | 0.781733 |
Target: 5'- gGACGAu--GCGGCGCGGcc-GCGCAu -3' miRNA: 3'- gCUGCUuauUGCUGCGCCccuCGCGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 31959 | 0.71 | 0.753648 |
Target: 5'- -cGCGAGUGGCGGCGaCGGGccGCGUg -3' miRNA: 3'- gcUGCUUAUUGCUGC-GCCCcuCGCGu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 6465 | 0.71 | 0.734382 |
Target: 5'- uCGGCGGcgcGGCGaACGuCGGGGuGCGCGg -3' miRNA: 3'- -GCUGCUua-UUGC-UGC-GCCCCuCGCGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 121554 | 0.75 | 0.553506 |
Target: 5'- gCGugGAAgu-CGACGCGGGcGGGcCGCu -3' miRNA: 3'- -GCugCUUauuGCUGCGCCC-CUC-GCGu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 3167 | 0.73 | 0.624062 |
Target: 5'- aCGGCGAcccuccgcGUcgcGACGGCGCGGGGaAGgGCu -3' miRNA: 3'- -GCUGCU--------UA---UUGCUGCGCCCC-UCgCGu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 96875 | 0.73 | 0.651489 |
Target: 5'- gGACGAGUAuugaagauggcaugGCGGCGCGcGaGGGCGCGg -3' miRNA: 3'- gCUGCUUAU--------------UGCUGCGCcC-CUCGCGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 41053 | 0.73 | 0.654532 |
Target: 5'- aGACGGu--ACGGCGCcgGGGGAcGCGCc -3' miRNA: 3'- gCUGCUuauUGCUGCG--CCCCU-CGCGu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 40782 | 0.73 | 0.664664 |
Target: 5'- aGACGc--AGCGGCgcugcaaacuGCGGGGGGCGCu -3' miRNA: 3'- gCUGCuuaUUGCUG----------CGCCCCUCGCGu -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 2881 | 0.73 | 0.674771 |
Target: 5'- uCGAcCGGGgcGCGGCgcgGCGGGGAGgGCGa -3' miRNA: 3'- -GCU-GCUUauUGCUG---CGCCCCUCgCGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 74895 | 0.72 | 0.68886 |
Target: 5'- uCGACGAucguGCGAuuCGCguagaagccauuuacGGGGAGCGCGu -3' miRNA: 3'- -GCUGCUuau-UGCU--GCG---------------CCCCUCGCGU- -5' |
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24724 | 5' | -54.9 | NC_005264.1 | + | 131598 | 0.71 | 0.734382 |
Target: 5'- uGugGAGggAGCGGCGCGcguGGGcGCGCGc -3' miRNA: 3'- gCugCUUa-UUGCUGCGC---CCCuCGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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