miRNA display CGI


Results 101 - 111 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24724 5' -54.9 NC_005264.1 + 124295 0.69 0.842245
Target:  5'- aGGCGAGUcGCGGCcggacgGCGGGGcGGCGg- -3'
miRNA:   3'- gCUGCUUAuUGCUG------CGCCCC-UCGCgu -5'
24724 5' -54.9 NC_005264.1 + 121526 0.69 0.834105
Target:  5'- uCGGCGGGccucGCGcgacuucaGCGCGGGGGGCGa- -3'
miRNA:   3'- -GCUGCUUau--UGC--------UGCGCCCCUCGCgu -5'
24724 5' -54.9 NC_005264.1 + 162706 0.7 0.817289
Target:  5'- cCGGCGuuaaGGCGGcCGcCGGGGAGCGgGa -3'
miRNA:   3'- -GCUGCuua-UUGCU-GC-GCCCCUCGCgU- -5'
24724 5' -54.9 NC_005264.1 + 158414 0.7 0.81643
Target:  5'- aGACG-AUGACGACGUcggcgaaGGGGGcacuGCGCu -3'
miRNA:   3'- gCUGCuUAUUGCUGCG-------CCCCU----CGCGu -5'
24724 5' -54.9 NC_005264.1 + 18626 0.7 0.808628
Target:  5'- -uGCGAaaGUGACGugGUGGGGuGcCGCc -3'
miRNA:   3'- gcUGCU--UAUUGCugCGCCCCuC-GCGu -5'
24724 5' -54.9 NC_005264.1 + 16562 0.7 0.79981
Target:  5'- -cGCGGugGGCGGCGcCGGGGcggcGGCGCAc -3'
miRNA:   3'- gcUGCUuaUUGCUGC-GCCCC----UCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 161305 0.71 0.781733
Target:  5'- cCGGCGcGGUcAACGcCGCGGGGccccaaaaaacGGCGCAg -3'
miRNA:   3'- -GCUGC-UUA-UUGCuGCGCCCC-----------UCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 55549 0.71 0.781733
Target:  5'- gCGACGGaaGUAcUGGaGgGGGGAGCGCGg -3'
miRNA:   3'- -GCUGCU--UAUuGCUgCgCCCCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 150986 0.71 0.753648
Target:  5'- -cGCGAGUGGCGGCGaCGGGccGCGUg -3'
miRNA:   3'- gcUGCUUAUUGCUGC-GCCCcuCGCGu -5'
24724 5' -54.9 NC_005264.1 + 122753 0.71 0.741169
Target:  5'- gCGACGAGgaaGACGACgaggaGCGGGGccucuugccgccggGGCGCu -3'
miRNA:   3'- -GCUGCUUa--UUGCUG-----CGCCCC--------------UCGCGu -5'
24724 5' -54.9 NC_005264.1 + 136117 1.09 0.004348
Target:  5'- aCGACGAAUAACGACGCGGGGAGCGCAu -3'
miRNA:   3'- -GCUGCUUAUUGCUGCGCCCCUCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.