miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24725 3' -55.9 NC_005264.1 + 125914 0.66 0.916185
Target:  5'- gGCGCGUgu-UGCUGUugCCuuggcugCUGCCg -3'
miRNA:   3'- -UGCGCGgcuAUGACAugGGca-----GACGG- -5'
24725 3' -55.9 NC_005264.1 + 25957 0.66 0.916185
Target:  5'- uACGCGCCcacuUUGaGCgCGUCUGCUu -3'
miRNA:   3'- -UGCGCGGcuauGACaUGgGCAGACGG- -5'
24725 3' -55.9 NC_005264.1 + 6888 0.66 0.916185
Target:  5'- gGCGCGUgu-UGCUGUugCCuuggcugCUGCCg -3'
miRNA:   3'- -UGCGCGgcuAUGACAugGGca-----GACGG- -5'
24725 3' -55.9 NC_005264.1 + 66623 0.66 0.910346
Target:  5'- -gGCGCCGucGCg--GCCCGaggcaagCUGCCa -3'
miRNA:   3'- ugCGCGGCuaUGacaUGGGCa------GACGG- -5'
24725 3' -55.9 NC_005264.1 + 51095 0.66 0.910346
Target:  5'- cGCGguCGCCGGUGCUG---CgGUCUGCUc -3'
miRNA:   3'- -UGC--GCGGCUAUGACaugGgCAGACGG- -5'
24725 3' -55.9 NC_005264.1 + 146323 0.66 0.910346
Target:  5'- gGCGUGCUuGUACc--AUCCGUCUGCg -3'
miRNA:   3'- -UGCGCGGcUAUGacaUGGGCAGACGg -5'
24725 3' -55.9 NC_005264.1 + 4112 0.66 0.910346
Target:  5'- -gGgGCCGAgGgUGU-CCCcUCUGCCa -3'
miRNA:   3'- ugCgCGGCUaUgACAuGGGcAGACGG- -5'
24725 3' -55.9 NC_005264.1 + 123139 0.66 0.910346
Target:  5'- -gGgGCCGAgGgUGU-CCCcUCUGCCa -3'
miRNA:   3'- ugCgCGGCUaUgACAuGGGcAGACGG- -5'
24725 3' -55.9 NC_005264.1 + 41921 0.67 0.897974
Target:  5'- uCGCGgCGGgguCUGUAgCUuUCUGCCa -3'
miRNA:   3'- uGCGCgGCUau-GACAUgGGcAGACGG- -5'
24725 3' -55.9 NC_005264.1 + 61264 0.67 0.897974
Target:  5'- gGCGCGCCucgGC-GUACCCGUauuCCa -3'
miRNA:   3'- -UGCGCGGcuaUGaCAUGGGCAgacGG- -5'
24725 3' -55.9 NC_005264.1 + 160948 0.67 0.897974
Target:  5'- uCGCGgCGGgguCUGUAgCUuUCUGCCa -3'
miRNA:   3'- uGCGCgGCUau-GACAUgGGcAGACGG- -5'
24725 3' -55.9 NC_005264.1 + 88243 0.67 0.897974
Target:  5'- uACGCaGaCCaGAUACUGUuuGCCCG-CcGCCu -3'
miRNA:   3'- -UGCG-C-GG-CUAUGACA--UGGGCaGaCGG- -5'
24725 3' -55.9 NC_005264.1 + 51933 0.67 0.890782
Target:  5'- cCGCGCCGAgcuugGCgaggGUGCCgcuaacgCGUCgUGUCg -3'
miRNA:   3'- uGCGCGGCUa----UGa---CAUGG-------GCAG-ACGG- -5'
24725 3' -55.9 NC_005264.1 + 104820 0.67 0.884696
Target:  5'- -gGCGCCGcacgACg--GCCUGUCcGCCg -3'
miRNA:   3'- ugCGCGGCua--UGacaUGGGCAGaCGG- -5'
24725 3' -55.9 NC_005264.1 + 113485 0.67 0.877727
Target:  5'- uACGCGCCGAU-CU-UGCCgCGUUccuccggGCCg -3'
miRNA:   3'- -UGCGCGGCUAuGAcAUGG-GCAGa------CGG- -5'
24725 3' -55.9 NC_005264.1 + 161680 0.67 0.873441
Target:  5'- cGCGCGCCGGcagACUGgcggccggaucguCCCGUgcGCCc -3'
miRNA:   3'- -UGCGCGGCUa--UGACau-----------GGGCAgaCGG- -5'
24725 3' -55.9 NC_005264.1 + 42654 0.67 0.873441
Target:  5'- cGCGCGCCGGcagACUGgcggccggaucguCCCGUgcGCCc -3'
miRNA:   3'- -UGCGCGGCUa--UGACau-----------GGGCAgaCGG- -5'
24725 3' -55.9 NC_005264.1 + 23420 0.67 0.870542
Target:  5'- cACGCGUaCGccaGCgGUGCCCGUCucgagUGCCc -3'
miRNA:   3'- -UGCGCG-GCua-UGaCAUGGGCAG-----ACGG- -5'
24725 3' -55.9 NC_005264.1 + 78647 0.68 0.863148
Target:  5'- cCGCGgCGGccCUGUGCCuCGUCccacuaugUGCCg -3'
miRNA:   3'- uGCGCgGCUauGACAUGG-GCAG--------ACGG- -5'
24725 3' -55.9 NC_005264.1 + 152608 0.68 0.863148
Target:  5'- cACGCGcCCGcUAUUGaGCCCGag-GCCa -3'
miRNA:   3'- -UGCGC-GGCuAUGACaUGGGCagaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.