Results 21 - 40 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24725 | 5' | -54.6 | NC_005264.1 | + | 134995 | 0.66 | 0.936194 |
Target: 5'- uGGGCGGAUGcCGCcgCGAcAGU-GGCGCg -3' miRNA: 3'- cUUCGUCUGC-GCGa-GUU-UCAcCCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 110128 | 0.66 | 0.936194 |
Target: 5'- aGAGCcGcCGCGCUUuuGG-GGGCGg -3' miRNA: 3'- cUUCGuCuGCGCGAGuuUCaCCCGCg -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 95467 | 0.66 | 0.936194 |
Target: 5'- -cGGCGGGCGCag-CGAGcGcGGGCGCu -3' miRNA: 3'- cuUCGUCUGCGcgaGUUU-CaCCCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 121912 | 0.67 | 0.920247 |
Target: 5'- cGggGCGcGGCGCGg-CGGGGaGGGCGa -3' miRNA: 3'- -CuuCGU-CUGCGCgaGUUUCaCCCGCg -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 105066 | 0.67 | 0.89557 |
Target: 5'- aGGAGCuAGACGaCGC--GAAGccguauguaUGGGCGCu -3' miRNA: 3'- -CUUCG-UCUGC-GCGagUUUC---------ACCCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 146577 | 0.67 | 0.908392 |
Target: 5'- uGAAGaucgauGACaGUGUUgCGGGGUGGGCGUa -3' miRNA: 3'- -CUUCgu----CUG-CGCGA-GUUUCACCCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 22757 | 0.67 | 0.914441 |
Target: 5'- cGAAGCGauagcGGCGgGCaauGAG-GGGCGCg -3' miRNA: 3'- -CUUCGU-----CUGCgCGaguUUCaCCCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 153293 | 0.67 | 0.902101 |
Target: 5'- cGAGGCGcgggcGACGCGUcgaagaguaaguUCGAGGgccccucgaGGGCGCc -3' miRNA: 3'- -CUUCGU-----CUGCGCG------------AGUUUCa--------CCCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 18418 | 0.67 | 0.914441 |
Target: 5'- cGgcGCAGGCGCGCccUCucgcucGGCGCg -3' miRNA: 3'- -CuuCGUCUGCGCG--AGuuucacCCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 30112 | 0.67 | 0.914441 |
Target: 5'- aGAuGCGGGCgGCGCggCAccGAGcUGcGGCGCa -3' miRNA: 3'- -CUuCGUCUG-CGCGa-GU--UUC-AC-CCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 109909 | 0.67 | 0.924165 |
Target: 5'- --cGCGGGCGCGgccaugcaaugcccCUCGAAGUG-GCGg -3' miRNA: 3'- cuuCGUCUGCGC--------------GAGUUUCACcCGCg -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 21506 | 0.67 | 0.925807 |
Target: 5'- --cGUGGGCacCGCcgUCGcAGUGGGCGCa -3' miRNA: 3'- cuuCGUCUGc-GCG--AGUuUCACCCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 145864 | 0.67 | 0.920247 |
Target: 5'- -cGGCGGAguuUGCGaacgGGGGUGGGUGCa -3' miRNA: 3'- cuUCGUCU---GCGCgag-UUUCACCCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 85828 | 0.67 | 0.918531 |
Target: 5'- aGAAGC--GCGCGCUCAguaccgggucuugcGcgcacuucuucGGUGGGuCGCa -3' miRNA: 3'- -CUUCGucUGCGCGAGU--------------U-----------UCACCC-GCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 98539 | 0.67 | 0.908392 |
Target: 5'- -cAGCGGcaACGCGCU----GUGGGcCGCg -3' miRNA: 3'- cuUCGUC--UGCGCGAguuuCACCC-GCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 59153 | 0.67 | 0.908392 |
Target: 5'- uGAAGCgcgAGAauaGCGCUCuauGGUGGucuagcaacGCGCu -3' miRNA: 3'- -CUUCG---UCUg--CGCGAGuu-UCACC---------CGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 34266 | 0.67 | 0.902101 |
Target: 5'- cGAGGCGcgggcGACGCGUcgaagaguaaguUCGAGGgccccucgaGGGCGCc -3' miRNA: 3'- -CUUCGU-----CUGCGCG------------AGUUUCa--------CCCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 126153 | 0.67 | 0.902101 |
Target: 5'- -cGGCAGAauccgccauUGCGC-CAGAGUauGGCGCa -3' miRNA: 3'- cuUCGUCU---------GCGCGaGUUUCAc-CCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 66394 | 0.67 | 0.89557 |
Target: 5'- gGAAGC---CGCuagGCUCAAGGUuGGCGCg -3' miRNA: 3'- -CUUCGucuGCG---CGAGUUUCAcCCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 8595 | 0.67 | 0.902101 |
Target: 5'- --cGCAGACGCGCguguuccuccgCAAcgcgcaccGGUaGGCGCu -3' miRNA: 3'- cuuCGUCUGCGCGa----------GUU--------UCAcCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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