miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24725 5' -54.6 NC_005264.1 + 7766 0.68 0.859468
Target:  5'- -cGGCAGuCGgGCacugagCGAGG-GGGCGCu -3'
miRNA:   3'- cuUCGUCuGCgCGa-----GUUUCaCCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 79710 0.68 0.867133
Target:  5'- aGGGCAGACGCGCcUCcgcGGccuuGGCGCc -3'
miRNA:   3'- cUUCGUCUGCGCG-AGuu-UCac--CCGCG- -5'
24725 5' -54.6 NC_005264.1 + 60290 0.68 0.859468
Target:  5'- cGGGCAuGACGUaCUCGGAuucGGGCGCg -3'
miRNA:   3'- cUUCGU-CUGCGcGAGUUUca-CCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 126792 0.68 0.859468
Target:  5'- -cGGCAGuCGgGCacugagCGAGG-GGGCGCu -3'
miRNA:   3'- cuUCGUCuGCgCGa-----GUUUCaCCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 12416 0.68 0.859468
Target:  5'- cGAGGCGGcccgcuACGUGCUUGGAGgcgcGGUGCg -3'
miRNA:   3'- -CUUCGUC------UGCGCGAGUUUCac--CCGCG- -5'
24725 5' -54.6 NC_005264.1 + 18120 0.68 0.867133
Target:  5'- aGAGGCuaagAGACGUGCUUGcuGUcuGGCGCg -3'
miRNA:   3'- -CUUCG----UCUGCGCGAGUuuCAc-CCGCG- -5'
24725 5' -54.6 NC_005264.1 + 154032 0.68 0.867133
Target:  5'- --cGCGaGCgGCGCUCGAAGaGGaGCGCu -3'
miRNA:   3'- cuuCGUcUG-CGCGAGUUUCaCC-CGCG- -5'
24725 5' -54.6 NC_005264.1 + 17106 0.68 0.886729
Target:  5'- aGAAGCAGugGcCGaccgaaacgcauauCUCuguAGGcuUGGGCGCg -3'
miRNA:   3'- -CUUCGUCugC-GC--------------GAGu--UUC--ACCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 76919 0.68 0.881806
Target:  5'- -uGGCcucAGACGCGgUCAGAGUcaGCGCc -3'
miRNA:   3'- cuUCG---UCUGCGCgAGUUUCAccCGCG- -5'
24725 5' -54.6 NC_005264.1 + 59022 0.68 0.874581
Target:  5'- gGAGGCAGGCGCG-UC-AGGUcGGucuccGCGCa -3'
miRNA:   3'- -CUUCGUCUGCGCgAGuUUCA-CC-----CGCG- -5'
24725 5' -54.6 NC_005264.1 + 58521 0.68 0.891539
Target:  5'- uAAGCGGcguCGCGcCUCAAGGUcacgaaaaacucagaGGGuCGCg -3'
miRNA:   3'- cUUCGUCu--GCGC-GAGUUUCA---------------CCC-GCG- -5'
24725 5' -54.6 NC_005264.1 + 96286 0.68 0.887423
Target:  5'- --cGUAGACGCGCUCGugcgccucGGCGUc -3'
miRNA:   3'- cuuCGUCUGCGCGAGUuucac---CCGCG- -5'
24725 5' -54.6 NC_005264.1 + 18051 0.68 0.874581
Target:  5'- cGAAGCGG-CgGCGCcgCGAGccaGGGCGCg -3'
miRNA:   3'- -CUUCGUCuG-CGCGa-GUUUca-CCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 32885 0.68 0.870884
Target:  5'- gGAGGCAGGCGCccagacuguauauGCguucucgaucgcgCAGGGgucgcgGGGCGCc -3'
miRNA:   3'- -CUUCGUCUGCG-------------CGa------------GUUUCa-----CCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 35005 0.68 0.867133
Target:  5'- --cGCGaGCgGCGCUCGAAGaGGaGCGCu -3'
miRNA:   3'- cuuCGUcUG-CGCGAGUUUCaCC-CGCG- -5'
24725 5' -54.6 NC_005264.1 + 64269 0.68 0.888804
Target:  5'- --uGCGGGCGcCGUUCAucuUGcGGCGCa -3'
miRNA:   3'- cuuCGUCUGC-GCGAGUuucAC-CCGCG- -5'
24725 5' -54.6 NC_005264.1 + 66394 0.67 0.89557
Target:  5'- gGAAGC---CGCuagGCUCAAGGUuGGCGCg -3'
miRNA:   3'- -CUUCGucuGCG---CGAGUUUCAcCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 126153 0.67 0.902101
Target:  5'- -cGGCAGAauccgccauUGCGC-CAGAGUauGGCGCa -3'
miRNA:   3'- cuUCGUCU---------GCGCGaGUUUCAc-CCGCG- -5'
24725 5' -54.6 NC_005264.1 + 119206 0.67 0.925807
Target:  5'- cGAAGCgAGcguaACGCGCgaccacgCGAGGUuuGGCGCg -3'
miRNA:   3'- -CUUCG-UC----UGCGCGa------GUUUCAc-CCGCG- -5'
24725 5' -54.6 NC_005264.1 + 21506 0.67 0.925807
Target:  5'- --cGUGGGCacCGCcgUCGcAGUGGGCGCa -3'
miRNA:   3'- cuuCGUCUGc-GCG--AGUuUCACCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.