Results 61 - 80 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24725 | 5' | -54.6 | NC_005264.1 | + | 31569 | 0.69 | 0.851593 |
Target: 5'- cGAcGUGGAgGCGC-CAGAGgugGGGCGa -3' miRNA: 3'- -CUuCGUCUgCGCGaGUUUCa--CCCGCg -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 150596 | 0.69 | 0.851593 |
Target: 5'- cGAcGUGGAgGCGC-CAGAGgugGGGCGa -3' miRNA: 3'- -CUuCGUCUgCGCGaGUUUCa--CCCGCg -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 99852 | 0.69 | 0.843513 |
Target: 5'- aGAAGCGcuacuGACGUGCgcCAAGGgcUGGGCGa -3' miRNA: 3'- -CUUCGU-----CUGCGCGa-GUUUC--ACCCGCg -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 116980 | 0.69 | 0.843513 |
Target: 5'- -uGGCGG-CGCGCagacUCGAAGUcuuGGGgGCg -3' miRNA: 3'- cuUCGUCuGCGCG----AGUUUCA---CCCgCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 98222 | 0.69 | 0.835236 |
Target: 5'- cGgcGuCGGGcCGCGCUgCGGAGagguuaUGGGCGCa -3' miRNA: 3'- -CuuC-GUCU-GCGCGA-GUUUC------ACCCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 36489 | 0.69 | 0.832716 |
Target: 5'- aAGGCGGcguuuucgugcgaaGCGCGCggccucgaCGAGGcGGGCGCa -3' miRNA: 3'- cUUCGUC--------------UGCGCGa-------GUUUCaCCCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 158518 | 0.69 | 0.82677 |
Target: 5'- aGggGCAGGCcuGCGCUgu-GGUGGaCGCc -3' miRNA: 3'- -CuuCGUCUG--CGCGAguuUCACCcGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 35514 | 0.69 | 0.82677 |
Target: 5'- --cGCuGGACGUGa---AAGUGGGCGCg -3' miRNA: 3'- cuuCG-UCUGCGCgaguUUCACCCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 39491 | 0.69 | 0.82677 |
Target: 5'- aGggGCAGGCcuGCGCUgu-GGUGGaCGCc -3' miRNA: 3'- -CuuCGUCUG--CGCGAguuUCACCcGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 120107 | 0.69 | 0.818122 |
Target: 5'- -cGGguGcCGCGCa-GAAGUgGGGCGCa -3' miRNA: 3'- cuUCguCuGCGCGagUUUCA-CCCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 136650 | 0.69 | 0.818122 |
Target: 5'- cGGAGCcucGACGCGCgUGGAGUaaaacaauGGGUGCa -3' miRNA: 3'- -CUUCGu--CUGCGCGaGUUUCA--------CCCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 107678 | 0.69 | 0.809302 |
Target: 5'- --cGUAGACGCgGUUCAGGGUGGauuuGCGg -3' miRNA: 3'- cuuCGUCUGCG-CGAGUUUCACC----CGCg -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 13314 | 0.69 | 0.809302 |
Target: 5'- gGAGGaCGGcCGCGCggagcaGGAGgagagGGGCGCg -3' miRNA: 3'- -CUUC-GUCuGCGCGag----UUUCa----CCCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 118933 | 0.69 | 0.809302 |
Target: 5'- cGAGGCgacGGcCGCGCUCAucGUcuccGGCGCc -3' miRNA: 3'- -CUUCG---UCuGCGCGAGUuuCAc---CCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 58766 | 0.69 | 0.809302 |
Target: 5'- aGAGGCGcACGCGCggu-GGUcGGCGCa -3' miRNA: 3'- -CUUCGUcUGCGCGaguuUCAcCCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 132341 | 0.69 | 0.809302 |
Target: 5'- gGAGGaCGGcCGCGCggagcaGGAGgagagGGGCGCg -3' miRNA: 3'- -CUUC-GUCuGCGCGag----UUUCa----CCCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 91309 | 0.7 | 0.791173 |
Target: 5'- -cAGCAGGCGguacaGCUCcAAGUcGaGGCGCa -3' miRNA: 3'- cuUCGUCUGCg----CGAGuUUCA-C-CCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 6901 | 0.7 | 0.789327 |
Target: 5'- --cGCAGucccaGCGCGCggcuuuccGUGGGCGCg -3' miRNA: 3'- cuuCGUC-----UGCGCGaguuu---CACCCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 15386 | 0.7 | 0.781884 |
Target: 5'- --cGCAGugGCgauaGCUUGAGGuUGGGuCGCg -3' miRNA: 3'- cuuCGUCugCG----CGAGUUUC-ACCC-GCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 87443 | 0.7 | 0.772457 |
Target: 5'- --cGCGGcCGCGCagAcGGUGGcGCGCa -3' miRNA: 3'- cuuCGUCuGCGCGagUuUCACC-CGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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