miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24725 5' -54.6 NC_005264.1 + 131443 0.68 0.859468
Target:  5'- cGAGGCGGcccgcuACGUGCUUGGAGgcgcGGUGCg -3'
miRNA:   3'- -CUUCGUC------UGCGCGAGUUUCac--CCGCG- -5'
24725 5' -54.6 NC_005264.1 + 129142 0.72 0.662377
Target:  5'- --cGCAGACGCgGCUCGGAGcgauGCGCg -3'
miRNA:   3'- cuuCGUCUGCG-CGAGUUUCacc-CGCG- -5'
24725 5' -54.6 NC_005264.1 + 126792 0.68 0.859468
Target:  5'- -cGGCAGuCGgGCacugagCGAGG-GGGCGCu -3'
miRNA:   3'- cuUCGUCuGCgCGa-----GUUUCaCCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 126153 0.67 0.902101
Target:  5'- -cGGCAGAauccgccauUGCGC-CAGAGUauGGCGCa -3'
miRNA:   3'- cuUCGUCU---------GCGCGaGUUUCAc-CCGCG- -5'
24725 5' -54.6 NC_005264.1 + 123653 0.66 0.945604
Target:  5'- uGAAGC-GAUGCGCggUAGAGUcGcGCGCc -3'
miRNA:   3'- -CUUCGuCUGCGCGa-GUUUCAcC-CGCG- -5'
24725 5' -54.6 NC_005264.1 + 121912 0.67 0.920247
Target:  5'- cGggGCGcGGCGCGg-CGGGGaGGGCGa -3'
miRNA:   3'- -CuuCGU-CUGCGCgaGUUUCaCCCGCg -5'
24725 5' -54.6 NC_005264.1 + 120107 0.69 0.818122
Target:  5'- -cGGguGcCGCGCa-GAAGUgGGGCGCa -3'
miRNA:   3'- cuUCguCuGCGCGagUUUCA-CCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 119206 0.67 0.925807
Target:  5'- cGAAGCgAGcguaACGCGCgaccacgCGAGGUuuGGCGCg -3'
miRNA:   3'- -CUUCG-UC----UGCGCGa------GUUUCAc-CCGCG- -5'
24725 5' -54.6 NC_005264.1 + 118933 0.69 0.809302
Target:  5'- cGAGGCgacGGcCGCGCUCAucGUcuccGGCGCc -3'
miRNA:   3'- -CUUCG---UCuGCGCGAGUuuCAc---CCGCG- -5'
24725 5' -54.6 NC_005264.1 + 116980 0.69 0.843513
Target:  5'- -uGGCGG-CGCGCagacUCGAAGUcuuGGGgGCg -3'
miRNA:   3'- cuUCGUCuGCGCG----AGUUUCA---CCCgCG- -5'
24725 5' -54.6 NC_005264.1 + 110128 0.66 0.936194
Target:  5'- aGAGCcGcCGCGCUUuuGG-GGGCGg -3'
miRNA:   3'- cUUCGuCuGCGCGAGuuUCaCCCGCg -5'
24725 5' -54.6 NC_005264.1 + 109909 0.67 0.924165
Target:  5'- --cGCGGGCGCGgccaugcaaugcccCUCGAAGUG-GCGg -3'
miRNA:   3'- cuuCGUCUGCGC--------------GAGUUUCACcCGCg -5'
24725 5' -54.6 NC_005264.1 + 107678 0.69 0.809302
Target:  5'- --cGUAGACGCgGUUCAGGGUGGauuuGCGg -3'
miRNA:   3'- cuuCGUCUGCG-CGAGUUUCACC----CGCg -5'
24725 5' -54.6 NC_005264.1 + 105066 0.67 0.89557
Target:  5'- aGGAGCuAGACGaCGC--GAAGccguauguaUGGGCGCu -3'
miRNA:   3'- -CUUCG-UCUGC-GCGagUUUC---------ACCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 99852 0.69 0.843513
Target:  5'- aGAAGCGcuacuGACGUGCgcCAAGGgcUGGGCGa -3'
miRNA:   3'- -CUUCGU-----CUGCGCGa-GUUUC--ACCCGCg -5'
24725 5' -54.6 NC_005264.1 + 98539 0.67 0.908392
Target:  5'- -cAGCGGcaACGCGCU----GUGGGcCGCg -3'
miRNA:   3'- cuUCGUC--UGCGCGAguuuCACCC-GCG- -5'
24725 5' -54.6 NC_005264.1 + 98222 0.69 0.835236
Target:  5'- cGgcGuCGGGcCGCGCUgCGGAGagguuaUGGGCGCa -3'
miRNA:   3'- -CuuC-GUCU-GCGCGA-GUUUC------ACCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 96286 0.68 0.887423
Target:  5'- --cGUAGACGCGCUCGugcgccucGGCGUc -3'
miRNA:   3'- cuuCGUCUGCGCGAGUuucac---CCGCG- -5'
24725 5' -54.6 NC_005264.1 + 95467 0.66 0.936194
Target:  5'- -cGGCGGGCGCag-CGAGcGcGGGCGCu -3'
miRNA:   3'- cuUCGUCUGCGcgaGUUU-CaCCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 91309 0.7 0.791173
Target:  5'- -cAGCAGGCGguacaGCUCcAAGUcGaGGCGCa -3'
miRNA:   3'- cuUCGUCUGCg----CGAGuUUCA-C-CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.