miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24725 5' -54.6 NC_005264.1 + 90442 0.66 0.945604
Target:  5'- --cGUAGAgauCGCUC-AGGUGGGCGg -3'
miRNA:   3'- cuuCGUCUgc-GCGAGuUUCACCCGCg -5'
24725 5' -54.6 NC_005264.1 + 87522 0.72 0.682977
Target:  5'- -cGGCAcuGGCGCGCggCAGAugcugcagcGUGGGCGUa -3'
miRNA:   3'- cuUCGU--CUGCGCGa-GUUU---------CACCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 87443 0.7 0.772457
Target:  5'- --cGCGGcCGCGCagAcGGUGGcGCGCa -3'
miRNA:   3'- cuuCGUCuGCGCGagUuUCACC-CGCG- -5'
24725 5' -54.6 NC_005264.1 + 85828 0.67 0.918531
Target:  5'- aGAAGC--GCGCGCUCAguaccgggucuugcGcgcacuucuucGGUGGGuCGCa -3'
miRNA:   3'- -CUUCGucUGCGCGAGU--------------U-----------UCACCC-GCG- -5'
24725 5' -54.6 NC_005264.1 + 84910 0.71 0.737524
Target:  5'- uGAGUAGcuggcgacgauggcuGCGCGCUCuguuguAGUGuGGCGCc -3'
miRNA:   3'- cUUCGUC---------------UGCGCGAGuu----UCAC-CCGCG- -5'
24725 5' -54.6 NC_005264.1 + 82364 0.76 0.451642
Target:  5'- cAGGCAGGCGCG-UCGAuccGGUgccGGGCGCa -3'
miRNA:   3'- cUUCGUCUGCGCgAGUU---UCA---CCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 80134 0.66 0.936194
Target:  5'- aGAGCAaGuAUGCGCUauuGGGgGGGCGUa -3'
miRNA:   3'- cUUCGU-C-UGCGCGAgu-UUCaCCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 79710 0.68 0.867133
Target:  5'- aGGGCAGACGCGCcUCcgcGGccuuGGCGCc -3'
miRNA:   3'- cUUCGUCUGCGCG-AGuu-UCac--CCGCG- -5'
24725 5' -54.6 NC_005264.1 + 76919 0.68 0.881806
Target:  5'- -uGGCcucAGACGCGgUCAGAGUcaGCGCc -3'
miRNA:   3'- cuUCG---UCUGCGCgAGUUUCAccCGCG- -5'
24725 5' -54.6 NC_005264.1 + 76713 0.66 0.949947
Target:  5'- cGAGGCucauGuuGaCGCUCAuGGUGcgcGGCGCa -3'
miRNA:   3'- -CUUCGu---CugC-GCGAGUuUCAC---CCGCG- -5'
24725 5' -54.6 NC_005264.1 + 75100 0.7 0.762902
Target:  5'- -cGGCAGGCGCcgGCgCcGAGcugGGGCGCa -3'
miRNA:   3'- cuUCGUCUGCG--CGaGuUUCa--CCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 75072 0.66 0.949947
Target:  5'- -uAGCuGACGCGgagaggCAGGGUGuGCGCu -3'
miRNA:   3'- cuUCGuCUGCGCga----GUUUCACcCGCG- -5'
24725 5' -54.6 NC_005264.1 + 70955 0.66 0.949947
Target:  5'- uGGAGCugccuGGGCuGuCGCUCAAAauuggaacGUGGcGCGCa -3'
miRNA:   3'- -CUUCG-----UCUG-C-GCGAGUUU--------CACC-CGCG- -5'
24725 5' -54.6 NC_005264.1 + 66394 0.67 0.89557
Target:  5'- gGAAGC---CGCuagGCUCAAGGUuGGCGCg -3'
miRNA:   3'- -CUUCGucuGCG---CGAGUUUCAcCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 64269 0.68 0.888804
Target:  5'- --uGCGGGCGcCGUUCAucuUGcGGCGCa -3'
miRNA:   3'- cuuCGUCUGC-GCGAGUuucAC-CCGCG- -5'
24725 5' -54.6 NC_005264.1 + 60696 0.66 0.931123
Target:  5'- gGAGGCcaGGAauCGCGCUUAGAGcguauuuccuGGCGCa -3'
miRNA:   3'- -CUUCG--UCU--GCGCGAGUUUCac--------CCGCG- -5'
24725 5' -54.6 NC_005264.1 + 60290 0.68 0.859468
Target:  5'- cGGGCAuGACGUaCUCGGAuucGGGCGCg -3'
miRNA:   3'- cUUCGU-CUGCGcGAGUUUca-CCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 59153 0.67 0.908392
Target:  5'- uGAAGCgcgAGAauaGCGCUCuauGGUGGucuagcaacGCGCu -3'
miRNA:   3'- -CUUCG---UCUg--CGCGAGuu-UCACC---------CGCG- -5'
24725 5' -54.6 NC_005264.1 + 59022 0.68 0.874581
Target:  5'- gGAGGCAGGCGCG-UC-AGGUcGGucuccGCGCa -3'
miRNA:   3'- -CUUCGUCUGCGCgAGuUUCA-CC-----CGCG- -5'
24725 5' -54.6 NC_005264.1 + 58766 0.69 0.809302
Target:  5'- aGAGGCGcACGCGCggu-GGUcGGCGCa -3'
miRNA:   3'- -CUUCGUcUGCGCGaguuUCAcCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.