Results 61 - 80 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24725 | 5' | -54.6 | NC_005264.1 | + | 58521 | 0.68 | 0.891539 |
Target: 5'- uAAGCGGcguCGCGcCUCAAGGUcacgaaaaacucagaGGGuCGCg -3' miRNA: 3'- cUUCGUCu--GCGC-GAGUUUCA---------------CCC-GCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 54722 | 0.66 | 0.94102 |
Target: 5'- gGAAGC-GugGCGCUCAc-GUGGaCGg -3' miRNA: 3'- -CUUCGuCugCGCGAGUuuCACCcGCg -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 54238 | 0.71 | 0.752254 |
Target: 5'- cGAGGCGGccccGCGCGC-CAacgugucGAGUGGGaGCg -3' miRNA: 3'- -CUUCGUC----UGCGCGaGU-------UUCACCCgCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 50876 | 0.66 | 0.936194 |
Target: 5'- cGAA-CAGGCGCGUcCAucc-GGGCGCu -3' miRNA: 3'- -CUUcGUCUGCGCGaGUuucaCCCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 50557 | 0.66 | 0.94102 |
Target: 5'- cGAAGCuAGGCGCGCgCGugcgGGaaGCGCa -3' miRNA: 3'- -CUUCG-UCUGCGCGaGUuucaCC--CGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 47392 | 0.66 | 0.936194 |
Target: 5'- uAAGCgagAGugGCGCgu--GGuUGGGUGCg -3' miRNA: 3'- cUUCG---UCugCGCGaguuUC-ACCCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 43996 | 0.71 | 0.703404 |
Target: 5'- cGAGGCGGACuuGgGCagggUCGAGGUGGGC-Ca -3' miRNA: 3'- -CUUCGUCUG--CgCG----AGUUUCACCCGcG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 43872 | 0.71 | 0.723585 |
Target: 5'- aGAGaCGGAacgaGCGCggCAAAGgGGGCGCc -3' miRNA: 3'- cUUC-GUCUg---CGCGa-GUUUCaCCCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 43378 | 0.66 | 0.949947 |
Target: 5'- uAGGUacgAGACGCuagggCAGAG-GGGCGCg -3' miRNA: 3'- cUUCG---UCUGCGcga--GUUUCaCCCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 40251 | 0.66 | 0.931123 |
Target: 5'- --cGUGGACGUGCgguacccCAAcgcGGUGcGGCGCu -3' miRNA: 3'- cuuCGUCUGCGCGa------GUU---UCAC-CCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 39491 | 0.69 | 0.82677 |
Target: 5'- aGggGCAGGCcuGCGCUgu-GGUGGaCGCc -3' miRNA: 3'- -CuuCGUCUG--CGCGAguuUCACCcGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 36489 | 0.69 | 0.832716 |
Target: 5'- aAGGCGGcguuuucgugcgaaGCGCGCggccucgaCGAGGcGGGCGCa -3' miRNA: 3'- cUUCGUC--------------UGCGCGa-------GUUUCaCCCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 36173 | 0.66 | 0.936194 |
Target: 5'- -cGGCAGGCgGCGUUUcguGGuUGGGCGa -3' miRNA: 3'- cuUCGUCUG-CGCGAGuu-UC-ACCCGCg -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 35788 | 0.73 | 0.620946 |
Target: 5'- gGgcGCGGugGCGCcgUCGuGGcGGGCGCc -3' miRNA: 3'- -CuuCGUCugCGCG--AGUuUCaCCCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 35514 | 0.69 | 0.82677 |
Target: 5'- --cGCuGGACGUGa---AAGUGGGCGCg -3' miRNA: 3'- cuuCG-UCUGCGCgaguUUCACCCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 35005 | 0.68 | 0.867133 |
Target: 5'- --cGCGaGCgGCGCUCGAAGaGGaGCGCu -3' miRNA: 3'- cuuCGUcUG-CGCGAGUUUCaCC-CGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 34266 | 0.67 | 0.902101 |
Target: 5'- cGAGGCGcgggcGACGCGUcgaagaguaaguUCGAGGgccccucgaGGGCGCc -3' miRNA: 3'- -CUUCGU-----CUGCGCG------------AGUUUCa--------CCCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 32885 | 0.68 | 0.870884 |
Target: 5'- gGAGGCAGGCGCccagacuguauauGCguucucgaucgcgCAGGGgucgcgGGGCGCc -3' miRNA: 3'- -CUUCGUCUGCG-------------CGa------------GUUUCa-----CCCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 31569 | 0.69 | 0.851593 |
Target: 5'- cGAcGUGGAgGCGC-CAGAGgugGGGCGa -3' miRNA: 3'- -CUuCGUCUgCGCGaGUUUCa--CCCGCg -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 30112 | 0.67 | 0.914441 |
Target: 5'- aGAuGCGGGCgGCGCggCAccGAGcUGcGGCGCa -3' miRNA: 3'- -CUuCGUCUG-CGCGa-GU--UUC-AC-CCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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