Results 61 - 80 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24725 | 5' | -54.6 | NC_005264.1 | + | 95467 | 0.66 | 0.936194 |
Target: 5'- -cGGCGGGCGCag-CGAGcGcGGGCGCu -3' miRNA: 3'- cuUCGUCUGCGcgaGUUU-CaCCCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 26793 | 0.66 | 0.94102 |
Target: 5'- --uGCAcGCGgGCUUccacgaggaGAAGUGGGcCGCg -3' miRNA: 3'- cuuCGUcUGCgCGAG---------UUUCACCC-GCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 54722 | 0.66 | 0.94102 |
Target: 5'- gGAAGC-GugGCGCUCAc-GUGGaCGg -3' miRNA: 3'- -CUUCGuCugCGCGAGUuuCACCcGCg -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 90442 | 0.66 | 0.945604 |
Target: 5'- --cGUAGAgauCGCUC-AGGUGGGCGg -3' miRNA: 3'- cuuCGUCUgc-GCGAGuUUCACCCGCg -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 64269 | 0.68 | 0.888804 |
Target: 5'- --uGCGGGCGcCGUUCAucuUGcGGCGCa -3' miRNA: 3'- cuuCGUCUGC-GCGAGUuucAC-CCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 17106 | 0.68 | 0.886729 |
Target: 5'- aGAAGCAGugGcCGaccgaaacgcauauCUCuguAGGcuUGGGCGCg -3' miRNA: 3'- -CUUCGUCugC-GC--------------GAGu--UUC--ACCCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 76919 | 0.68 | 0.881806 |
Target: 5'- -uGGCcucAGACGCGgUCAGAGUcaGCGCc -3' miRNA: 3'- cuUCG---UCUGCGCgAGUUUCAccCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 154969 | 0.76 | 0.470416 |
Target: 5'- --cGCAGAUGCGCagCGAAcGUGGGgGCc -3' miRNA: 3'- cuuCGUCUGCGCGa-GUUU-CACCCgCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 131604 | 0.74 | 0.549054 |
Target: 5'- gGGAGCGG-CGCGC-----GUGGGCGCg -3' miRNA: 3'- -CUUCGUCuGCGCGaguuuCACCCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 133869 | 0.73 | 0.610589 |
Target: 5'- -cAGCGGcucCGCGCUCAGAGUcuuGGCGUu -3' miRNA: 3'- cuUCGUCu--GCGCGAGUUUCAc--CCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 35788 | 0.73 | 0.620946 |
Target: 5'- gGgcGCGGugGCGCcgUCGuGGcGGGCGCc -3' miRNA: 3'- -CuuCGUCugCGCG--AGUuUCaCCCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 129142 | 0.72 | 0.662377 |
Target: 5'- --cGCAGACGCgGCUCGGAGcgauGCGCg -3' miRNA: 3'- cuuCGUCUGCG-CGAGUUUCacc-CGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 29171 | 0.72 | 0.692195 |
Target: 5'- cGAGCAGGCGUuccucuaGCUCcccAGGUGGcGUGCa -3' miRNA: 3'- cUUCGUCUGCG-------CGAGu--UUCACC-CGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 143208 | 0.72 | 0.693217 |
Target: 5'- -cAGCAGGCagccagaaaGCGUUCAGAGgggagGGGCGa -3' miRNA: 3'- cuUCGUCUG---------CGCGAGUUUCa----CCCGCg -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 43996 | 0.71 | 0.703404 |
Target: 5'- cGAGGCGGACuuGgGCagggUCGAGGUGGGC-Ca -3' miRNA: 3'- -CUUCGUCUG--CgCG----AGUUUCACCCGcG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 43872 | 0.71 | 0.723585 |
Target: 5'- aGAGaCGGAacgaGCGCggCAAAGgGGGCGCc -3' miRNA: 3'- cUUC-GUCUg---CGCGa-GUUUCaCCCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 84910 | 0.71 | 0.737524 |
Target: 5'- uGAGUAGcuggcgacgauggcuGCGCGCUCuguuguAGUGuGGCGCc -3' miRNA: 3'- cUUCGUC---------------UGCGCGAGuu----UCAC-CCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 12416 | 0.68 | 0.859468 |
Target: 5'- cGAGGCGGcccgcuACGUGCUUGGAGgcgcGGUGCg -3' miRNA: 3'- -CUUCGUC------UGCGCGAGUUUCac--CCGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 35005 | 0.68 | 0.867133 |
Target: 5'- --cGCGaGCgGCGCUCGAAGaGGaGCGCu -3' miRNA: 3'- cuuCGUcUG-CGCGAGUUUCaCC-CGCG- -5' |
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24725 | 5' | -54.6 | NC_005264.1 | + | 59022 | 0.68 | 0.874581 |
Target: 5'- gGAGGCAGGCGCG-UC-AGGUcGGucuccGCGCa -3' miRNA: 3'- -CUUCGUCUGCGCgAGuUUCA-CC-----CGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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