miRNA display CGI


Results 81 - 98 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24725 5' -54.6 NC_005264.1 + 129142 0.72 0.662377
Target:  5'- --cGCAGACGCgGCUCGGAGcgauGCGCg -3'
miRNA:   3'- cuuCGUCUGCG-CGAGUUUCacc-CGCG- -5'
24725 5' -54.6 NC_005264.1 + 35788 0.73 0.620946
Target:  5'- gGgcGCGGugGCGCcgUCGuGGcGGGCGCc -3'
miRNA:   3'- -CuuCGUCugCGCG--AGUuUCaCCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 133869 0.73 0.610589
Target:  5'- -cAGCGGcucCGCGCUCAGAGUcuuGGCGUu -3'
miRNA:   3'- cuUCGUCu--GCGCGAGUUUCAc--CCGCG- -5'
24725 5' -54.6 NC_005264.1 + 131604 0.74 0.549054
Target:  5'- gGGAGCGG-CGCGC-----GUGGGCGCg -3'
miRNA:   3'- -CUUCGUCuGCGCGaguuuCACCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 154969 0.76 0.470416
Target:  5'- --cGCAGAUGCGCagCGAAcGUGGGgGCc -3'
miRNA:   3'- cuuCGUCUGCGCGa-GUUU-CACCCgCG- -5'
24725 5' -54.6 NC_005264.1 + 54238 0.71 0.752254
Target:  5'- cGAGGCGGccccGCGCGC-CAacgugucGAGUGGGaGCg -3'
miRNA:   3'- -CUUCGUC----UGCGCGaGU-------UUCACCCgCG- -5'
24725 5' -54.6 NC_005264.1 + 91309 0.7 0.791173
Target:  5'- -cAGCAGGCGguacaGCUCcAAGUcGaGGCGCa -3'
miRNA:   3'- cuUCGUCUGCg----CGAGuUUCA-C-CCGCG- -5'
24725 5' -54.6 NC_005264.1 + 76919 0.68 0.881806
Target:  5'- -uGGCcucAGACGCGgUCAGAGUcaGCGCc -3'
miRNA:   3'- cuUCG---UCUGCGCgAGUUUCAccCGCG- -5'
24725 5' -54.6 NC_005264.1 + 59022 0.68 0.874581
Target:  5'- gGAGGCAGGCGCG-UC-AGGUcGGucuccGCGCa -3'
miRNA:   3'- -CUUCGUCUGCGCgAGuUUCA-CC-----CGCG- -5'
24725 5' -54.6 NC_005264.1 + 35005 0.68 0.867133
Target:  5'- --cGCGaGCgGCGCUCGAAGaGGaGCGCu -3'
miRNA:   3'- cuuCGUcUG-CGCGAGUUUCaCC-CGCG- -5'
24725 5' -54.6 NC_005264.1 + 12416 0.68 0.859468
Target:  5'- cGAGGCGGcccgcuACGUGCUUGGAGgcgcGGUGCg -3'
miRNA:   3'- -CUUCGUC------UGCGCGAGUUUCac--CCGCG- -5'
24725 5' -54.6 NC_005264.1 + 7766 0.68 0.859468
Target:  5'- -cGGCAGuCGgGCacugagCGAGG-GGGCGCu -3'
miRNA:   3'- cuUCGUCuGCgCGa-----GUUUCaCCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 31569 0.69 0.851593
Target:  5'- cGAcGUGGAgGCGC-CAGAGgugGGGCGa -3'
miRNA:   3'- -CUuCGUCUgCGCGaGUUUCa--CCCGCg -5'
24725 5' -54.6 NC_005264.1 + 39491 0.69 0.82677
Target:  5'- aGggGCAGGCcuGCGCUgu-GGUGGaCGCc -3'
miRNA:   3'- -CuuCGUCUG--CGCGAguuUCACCcGCG- -5'
24725 5' -54.6 NC_005264.1 + 136650 0.69 0.818122
Target:  5'- cGGAGCcucGACGCGCgUGGAGUaaaacaauGGGUGCa -3'
miRNA:   3'- -CUUCGu--CUGCGCGaGUUUCA--------CCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 120107 0.69 0.818122
Target:  5'- -cGGguGcCGCGCa-GAAGUgGGGCGCa -3'
miRNA:   3'- cuUCguCuGCGCGagUUUCA-CCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 13314 0.69 0.809302
Target:  5'- gGAGGaCGGcCGCGCggagcaGGAGgagagGGGCGCg -3'
miRNA:   3'- -CUUC-GUCuGCGCGag----UUUCa----CCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 82364 0.76 0.451642
Target:  5'- cAGGCAGGCGCG-UCGAuccGGUgccGGGCGCa -3'
miRNA:   3'- cUUCGUCUGCGCgAGUU---UCA---CCCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.