miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24725 5' -54.6 NC_005264.1 + 126153 0.67 0.902101
Target:  5'- -cGGCAGAauccgccauUGCGC-CAGAGUauGGCGCa -3'
miRNA:   3'- cuUCGUCU---------GCGCGaGUUUCAc-CCGCG- -5'
24725 5' -54.6 NC_005264.1 + 34266 0.67 0.902101
Target:  5'- cGAGGCGcgggcGACGCGUcgaagaguaaguUCGAGGgccccucgaGGGCGCc -3'
miRNA:   3'- -CUUCGU-----CUGCGCG------------AGUUUCa--------CCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 59153 0.67 0.908392
Target:  5'- uGAAGCgcgAGAauaGCGCUCuauGGUGGucuagcaacGCGCu -3'
miRNA:   3'- -CUUCG---UCUg--CGCGAGuu-UCACC---------CGCG- -5'
24725 5' -54.6 NC_005264.1 + 98539 0.67 0.908392
Target:  5'- -cAGCGGcaACGCGCU----GUGGGcCGCg -3'
miRNA:   3'- cuUCGUC--UGCGCGAguuuCACCC-GCG- -5'
24725 5' -54.6 NC_005264.1 + 85828 0.67 0.918531
Target:  5'- aGAAGC--GCGCGCUCAguaccgggucuugcGcgcacuucuucGGUGGGuCGCa -3'
miRNA:   3'- -CUUCGucUGCGCGAGU--------------U-----------UCACCC-GCG- -5'
24725 5' -54.6 NC_005264.1 + 145864 0.67 0.920247
Target:  5'- -cGGCGGAguuUGCGaacgGGGGUGGGUGCa -3'
miRNA:   3'- cuUCGUCU---GCGCgag-UUUCACCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 2886 0.67 0.920247
Target:  5'- cGggGCGcGGCGCGg-CGGGGaGGGCGa -3'
miRNA:   3'- -CuuCGU-CUGCGCgaGUUUCaCCCGCg -5'
24725 5' -54.6 NC_005264.1 + 109909 0.67 0.924165
Target:  5'- --cGCGGGCGCGgccaugcaaugcccCUCGAAGUG-GCGg -3'
miRNA:   3'- cuuCGUCUGCGC--------------GAGUUUCACcCGCg -5'
24725 5' -54.6 NC_005264.1 + 21506 0.67 0.925807
Target:  5'- --cGUGGGCacCGCcgUCGcAGUGGGCGCa -3'
miRNA:   3'- cuuCGUCUGc-GCG--AGUuUCACCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 119206 0.67 0.925807
Target:  5'- cGAAGCgAGcguaACGCGCgaccacgCGAGGUuuGGCGCg -3'
miRNA:   3'- -CUUCG-UC----UGCGCGa------GUUUCAc-CCGCG- -5'
24725 5' -54.6 NC_005264.1 + 87443 0.7 0.772457
Target:  5'- --cGCGGcCGCGCagAcGGUGGcGCGCa -3'
miRNA:   3'- cuuCGUCuGCGCGagUuUCACC-CGCG- -5'
24725 5' -54.6 NC_005264.1 + 6901 0.7 0.789327
Target:  5'- --cGCAGucccaGCGCGCggcuuuccGUGGGCGCg -3'
miRNA:   3'- cuuCGUC-----UGCGCGaguuu---CACCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 58766 0.69 0.809302
Target:  5'- aGAGGCGcACGCGCggu-GGUcGGCGCa -3'
miRNA:   3'- -CUUCGUcUGCGCGaguuUCAcCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 107678 0.69 0.809302
Target:  5'- --cGUAGACGCgGUUCAGGGUGGauuuGCGg -3'
miRNA:   3'- cuuCGUCUGCG-CGAGUUUCACC----CGCg -5'
24725 5' -54.6 NC_005264.1 + 75100 0.7 0.762902
Target:  5'- -cGGCAGGCGCcgGCgCcGAGcugGGGCGCa -3'
miRNA:   3'- cuUCGUCUGCG--CGaGuUUCa--CCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 3600 0.7 0.762902
Target:  5'- uGAGUAGGcCGUGgUgGAcGGUGGGCGCu -3'
miRNA:   3'- cUUCGUCU-GCGCgAgUU-UCACCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 87522 0.72 0.682977
Target:  5'- -cGGCAcuGGCGCGCggCAGAugcugcagcGUGGGCGUa -3'
miRNA:   3'- cuUCGU--CUGCGCGa-GUUU---------CACCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 136458 0.73 0.641677
Target:  5'- uGAGGC---CGCGCUCAGAGacGGCGCc -3'
miRNA:   3'- -CUUCGucuGCGCGAGUUUCacCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 154814 0.73 0.620946
Target:  5'- gGgcGCGGugGCGCcgUCGuGGcGGGCGCc -3'
miRNA:   3'- -CuuCGUCugCGCG--AGUuUCaCCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 70955 0.66 0.949947
Target:  5'- uGGAGCugccuGGGCuGuCGCUCAAAauuggaacGUGGcGCGCa -3'
miRNA:   3'- -CUUCG-----UCUG-C-GCGAGUUU--------CACC-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.