miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24725 5' -54.6 NC_005264.1 + 50876 0.66 0.936194
Target:  5'- cGAA-CAGGCGCGUcCAucc-GGGCGCu -3'
miRNA:   3'- -CUUcGUCUGCGCGaGUuucaCCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 40251 0.66 0.931123
Target:  5'- --cGUGGACGUGCgguacccCAAcgcGGUGcGGCGCu -3'
miRNA:   3'- cuuCGUCUGCGCGa------GUU---UCAC-CCGCG- -5'
24725 5' -54.6 NC_005264.1 + 60696 0.66 0.931123
Target:  5'- gGAGGCcaGGAauCGCGCUUAGAGcguauuuccuGGCGCa -3'
miRNA:   3'- -CUUCG--UCU--GCGCGAGUUUCac--------CCGCG- -5'
24725 5' -54.6 NC_005264.1 + 21506 0.67 0.925807
Target:  5'- --cGUGGGCacCGCcgUCGcAGUGGGCGCa -3'
miRNA:   3'- cuuCGUCUGc-GCG--AGUuUCACCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 119206 0.67 0.925807
Target:  5'- cGAAGCgAGcguaACGCGCgaccacgCGAGGUuuGGCGCg -3'
miRNA:   3'- -CUUCG-UC----UGCGCGa------GUUUCAc-CCGCG- -5'
24725 5' -54.6 NC_005264.1 + 109909 0.67 0.924165
Target:  5'- --cGCGGGCGCGgccaugcaaugcccCUCGAAGUG-GCGg -3'
miRNA:   3'- cuuCGUCUGCGC--------------GAGUUUCACcCGCg -5'
24725 5' -54.6 NC_005264.1 + 2886 0.67 0.920247
Target:  5'- cGggGCGcGGCGCGg-CGGGGaGGGCGa -3'
miRNA:   3'- -CuuCGU-CUGCGCgaGUUUCaCCCGCg -5'
24725 5' -54.6 NC_005264.1 + 121912 0.67 0.920247
Target:  5'- cGggGCGcGGCGCGg-CGGGGaGGGCGa -3'
miRNA:   3'- -CuuCGU-CUGCGCgaGUUUCaCCCGCg -5'
24725 5' -54.6 NC_005264.1 + 145864 0.67 0.920247
Target:  5'- -cGGCGGAguuUGCGaacgGGGGUGGGUGCa -3'
miRNA:   3'- cuUCGUCU---GCGCgag-UUUCACCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 85828 0.67 0.918531
Target:  5'- aGAAGC--GCGCGCUCAguaccgggucuugcGcgcacuucuucGGUGGGuCGCa -3'
miRNA:   3'- -CUUCGucUGCGCGAGU--------------U-----------UCACCC-GCG- -5'
24725 5' -54.6 NC_005264.1 + 22757 0.67 0.914441
Target:  5'- cGAAGCGauagcGGCGgGCaauGAG-GGGCGCg -3'
miRNA:   3'- -CUUCGU-----CUGCgCGaguUUCaCCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 18418 0.67 0.914441
Target:  5'- cGgcGCAGGCGCGCccUCucgcucGGCGCg -3'
miRNA:   3'- -CuuCGUCUGCGCG--AGuuucacCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 30112 0.67 0.914441
Target:  5'- aGAuGCGGGCgGCGCggCAccGAGcUGcGGCGCa -3'
miRNA:   3'- -CUuCGUCUG-CGCGa-GU--UUC-AC-CCGCG- -5'
24725 5' -54.6 NC_005264.1 + 59153 0.67 0.908392
Target:  5'- uGAAGCgcgAGAauaGCGCUCuauGGUGGucuagcaacGCGCu -3'
miRNA:   3'- -CUUCG---UCUg--CGCGAGuu-UCACC---------CGCG- -5'
24725 5' -54.6 NC_005264.1 + 98539 0.67 0.908392
Target:  5'- -cAGCGGcaACGCGCU----GUGGGcCGCg -3'
miRNA:   3'- cuUCGUC--UGCGCGAguuuCACCC-GCG- -5'
24725 5' -54.6 NC_005264.1 + 146577 0.67 0.908392
Target:  5'- uGAAGaucgauGACaGUGUUgCGGGGUGGGCGUa -3'
miRNA:   3'- -CUUCgu----CUG-CGCGA-GUUUCACCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 8595 0.67 0.902101
Target:  5'- --cGCAGACGCGCguguuccuccgCAAcgcgcaccGGUaGGCGCu -3'
miRNA:   3'- cuuCGUCUGCGCGa----------GUU--------UCAcCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 153293 0.67 0.902101
Target:  5'- cGAGGCGcgggcGACGCGUcgaagaguaaguUCGAGGgccccucgaGGGCGCc -3'
miRNA:   3'- -CUUCGU-----CUGCGCG------------AGUUUCa--------CCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 34266 0.67 0.902101
Target:  5'- cGAGGCGcgggcGACGCGUcgaagaguaaguUCGAGGgccccucgaGGGCGCc -3'
miRNA:   3'- -CUUCGU-----CUGCGCG------------AGUUUCa--------CCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 126153 0.67 0.902101
Target:  5'- -cGGCAGAauccgccauUGCGC-CAGAGUauGGCGCa -3'
miRNA:   3'- cuUCGUCU---------GCGCGaGUUUCAc-CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.