miRNA display CGI


Results 21 - 31 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24726 3' -58.1 NC_005264.1 + 107203 0.69 0.646246
Target:  5'- gAGCuGuUCCGGcguauggguacGCGGAGCGGUGCgCAAg -3'
miRNA:   3'- -UCGuCuAGGUC-----------CGCUUCGCCACG-GUU- -5'
24726 3' -58.1 NC_005264.1 + 123017 0.69 0.615443
Target:  5'- cAGCAGGcuccaUCUAGGCGGAuGC-GUGCCGc -3'
miRNA:   3'- -UCGUCU-----AGGUCCGCUU-CGcCACGGUu -5'
24726 3' -58.1 NC_005264.1 + 149570 0.69 0.605191
Target:  5'- cGCGGAcagccCCGGGCGGAGgGGggcugcucgaUGCCGAg -3'
miRNA:   3'- uCGUCUa----GGUCCGCUUCgCC----------ACGGUU- -5'
24726 3' -58.1 NC_005264.1 + 79706 0.69 0.593936
Target:  5'- cGCuAGAUCUaacgcAGGCGGAGCuauacgaGGUGCCGc -3'
miRNA:   3'- uCG-UCUAGG-----UCCGCUUCG-------CCACGGUu -5'
24726 3' -58.1 NC_005264.1 + 132757 0.7 0.554372
Target:  5'- cGCGauucuGUCCGGGCGcGGCGGcGCCGAc -3'
miRNA:   3'- uCGUc----UAGGUCCGCuUCGCCaCGGUU- -5'
24726 3' -58.1 NC_005264.1 + 150539 0.71 0.51464
Target:  5'- aGGCGGcUCCAGGCucGGGCGGggaggGCCGu -3'
miRNA:   3'- -UCGUCuAGGUCCGc-UUCGCCa----CGGUu -5'
24726 3' -58.1 NC_005264.1 + 31512 0.71 0.51464
Target:  5'- aGGCGGcUCCAGGCucGGGCGGggaggGCCGu -3'
miRNA:   3'- -UCGUCuAGGUCCGc-UUCGCCa----CGGUu -5'
24726 3' -58.1 NC_005264.1 + 30235 0.71 0.485617
Target:  5'- cGCGG--CCAGcGCGGcaaAGCGGUGCCAc -3'
miRNA:   3'- uCGUCuaGGUC-CGCU---UCGCCACGGUu -5'
24726 3' -58.1 NC_005264.1 + 120719 0.71 0.476115
Target:  5'- cGGCGG--UCGGGCGGAGgaCGGUGCCGg -3'
miRNA:   3'- -UCGUCuaGGUCCGCUUC--GCCACGGUu -5'
24726 3' -58.1 NC_005264.1 + 98342 0.72 0.44727
Target:  5'- cAGCGcGGUCCAGGCGAcucucucGGCGcGcuUGCCGAa -3'
miRNA:   3'- -UCGU-CUAGGUCCGCU-------UCGC-C--ACGGUU- -5'
24726 3' -58.1 NC_005264.1 + 137066 1.06 0.002496
Target:  5'- gAGCAGAUCCAGGCGAAGCGGUGCCAAu -3'
miRNA:   3'- -UCGUCUAGGUCCGCUUCGCCACGGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.