miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24726 5' -54.1 NC_005264.1 + 23 0.66 0.966847
Target:  5'- cGCCAUaacgCCG--CGGCCCUAGCUGu -3'
miRNA:   3'- uUGGUAga--GGCagGCUGGGAUUGACc -5'
24726 5' -54.1 NC_005264.1 + 87787 0.66 0.960094
Target:  5'- cAGCUA-CUCCG-CCGACCCgGGCUu- -3'
miRNA:   3'- -UUGGUaGAGGCaGGCUGGGaUUGAcc -5'
24726 5' -54.1 NC_005264.1 + 121374 0.67 0.939233
Target:  5'- cACC-UCUCUGUCCcacCCCUAACccUGGc -3'
miRNA:   3'- uUGGuAGAGGCAGGcu-GGGAUUG--ACC- -5'
24726 5' -54.1 NC_005264.1 + 2347 0.67 0.939233
Target:  5'- cACC-UCUCUGUCCcacCCCUAACccUGGc -3'
miRNA:   3'- uUGGuAGAGGCAGGcu-GGGAUUG--ACC- -5'
24726 5' -54.1 NC_005264.1 + 30512 0.67 0.934351
Target:  5'- cGGCCGUcCUCCGgggagcuccaCGACCCgccucGCUGGc -3'
miRNA:   3'- -UUGGUA-GAGGCag--------GCUGGGau---UGACC- -5'
24726 5' -54.1 NC_005264.1 + 59393 0.67 0.934351
Target:  5'- cAGCCAUCa-UGUCCGGCCCguggauGCUcGGu -3'
miRNA:   3'- -UUGGUAGagGCAGGCUGGGau----UGA-CC- -5'
24726 5' -54.1 NC_005264.1 + 149539 0.67 0.934351
Target:  5'- cGGCCGUcCUCCGgggagcuccaCGACCCgccucGCUGGc -3'
miRNA:   3'- -UUGGUA-GAGGCag--------GCUGGGau---UGACC- -5'
24726 5' -54.1 NC_005264.1 + 99756 0.67 0.929228
Target:  5'- aGGCC-UUUCCGcgaCGGCCCUcgccgAGCUGGa -3'
miRNA:   3'- -UUGGuAGAGGCag-GCUGGGA-----UUGACC- -5'
24726 5' -54.1 NC_005264.1 + 16105 0.67 0.929228
Target:  5'- cGCCGcCcUCGUUCGACCCUAAgcUUGGg -3'
miRNA:   3'- uUGGUaGaGGCAGGCUGGGAUU--GACC- -5'
24726 5' -54.1 NC_005264.1 + 82612 0.68 0.899998
Target:  5'- cAUUAUCUCCGUCCacGGCCCaAGCUu- -3'
miRNA:   3'- uUGGUAGAGGCAGG--CUGGGaUUGAcc -5'
24726 5' -54.1 NC_005264.1 + 29366 0.68 0.893438
Target:  5'- cGCCggCUUCGUCCGAUg--AGCUGGa -3'
miRNA:   3'- uUGGuaGAGGCAGGCUGggaUUGACC- -5'
24726 5' -54.1 NC_005264.1 + 120055 0.7 0.807159
Target:  5'- uACCuaUUCCG-CCGGCCgUAACUGGc -3'
miRNA:   3'- uUGGuaGAGGCaGGCUGGgAUUGACC- -5'
24726 5' -54.1 NC_005264.1 + 1028 0.7 0.807159
Target:  5'- uACCuaUUCCG-CCGGCCgUAACUGGc -3'
miRNA:   3'- uUGGuaGAGGCaGGCUGGgAUUGACC- -5'
24726 5' -54.1 NC_005264.1 + 86910 0.73 0.701765
Target:  5'- aGACCAcg-CUGUCCGAUCCUAACUa- -3'
miRNA:   3'- -UUGGUagaGGCAGGCUGGGAUUGAcc -5'
24726 5' -54.1 NC_005264.1 + 137100 1.08 0.005763
Target:  5'- aAACCAUCUCCGUCCGACCCUAACUGGu -3'
miRNA:   3'- -UUGGUAGAGGCAGGCUGGGAUUGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.