miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24727 3' -54 NC_005264.1 + 13421 0.66 0.960031
Target:  5'- ---cGGCGCgcGACcgCCgccgccgAGACGCGa -3'
miRNA:   3'- auacCCGCGaaCUGuaGGa------UCUGCGC- -5'
24727 3' -54 NC_005264.1 + 132448 0.66 0.960031
Target:  5'- ---cGGCGCgcGACcgCCgccgccgAGACGCGa -3'
miRNA:   3'- auacCCGCGaaCUGuaGGa------UCUGCGC- -5'
24727 3' -54 NC_005264.1 + 83122 0.66 0.956266
Target:  5'- --cGGGCGCcaaGGCcgCggAGGCGCGu -3'
miRNA:   3'- auaCCCGCGaa-CUGuaGgaUCUGCGC- -5'
24727 3' -54 NC_005264.1 + 48387 0.66 0.956266
Target:  5'- --cGaGGCGCUcGACGUUCgucgAGGCGaCGg -3'
miRNA:   3'- auaC-CCGCGAaCUGUAGGa---UCUGC-GC- -5'
24727 3' -54 NC_005264.1 + 98248 0.66 0.948027
Target:  5'- uUAUGGGCGCaaUGACcacGUUCgcaaUGGACGUGu -3'
miRNA:   3'- -AUACCCGCGa-ACUG---UAGG----AUCUGCGC- -5'
24727 3' -54 NC_005264.1 + 92968 0.67 0.933849
Target:  5'- -cUGGGCGCgaagcGCGUCCgccgUAGGgGCGa -3'
miRNA:   3'- auACCCGCGaac--UGUAGG----AUCUgCGC- -5'
24727 3' -54 NC_005264.1 + 13912 0.67 0.933849
Target:  5'- --gGGGCGCga-ACGUCCaGGAgGCa -3'
miRNA:   3'- auaCCCGCGaacUGUAGGaUCUgCGc -5'
24727 3' -54 NC_005264.1 + 44605 0.67 0.933849
Target:  5'- --aGGGUcCUUGu--UCCUGGugGCGg -3'
miRNA:   3'- auaCCCGcGAACuguAGGAUCugCGC- -5'
24727 3' -54 NC_005264.1 + 3632 0.67 0.917443
Target:  5'- --cGGGCGCgcUGACAUUCgu--CGCGa -3'
miRNA:   3'- auaCCCGCGa-ACUGUAGGaucuGCGC- -5'
24727 3' -54 NC_005264.1 + 122659 0.67 0.917443
Target:  5'- --cGGGCGCgcUGACAUUCgu--CGCGa -3'
miRNA:   3'- auaCCCGCGa-ACUGUAGGaucuGCGC- -5'
24727 3' -54 NC_005264.1 + 136358 0.67 0.917443
Target:  5'- --cGGGCGCUgGGCG-CUgccGGCGCGa -3'
miRNA:   3'- auaCCCGCGAaCUGUaGGau-CUGCGC- -5'
24727 3' -54 NC_005264.1 + 35787 0.68 0.89212
Target:  5'- --aGGGCGCggUGGCG-CCgucGugGCGg -3'
miRNA:   3'- auaCCCGCGa-ACUGUaGGau-CugCGC- -5'
24727 3' -54 NC_005264.1 + 154813 0.68 0.89212
Target:  5'- --aGGGCGCggUGGCG-CCgucGugGCGg -3'
miRNA:   3'- auaCCCGCGa-ACUGUaGGau-CugCGC- -5'
24727 3' -54 NC_005264.1 + 35280 0.68 0.885189
Target:  5'- --cGGGCGCggccGugGUCCUGacuguucacGACGCu -3'
miRNA:   3'- auaCCCGCGaa--CugUAGGAU---------CUGCGc -5'
24727 3' -54 NC_005264.1 + 151538 0.68 0.885189
Target:  5'- cAUGGGCgGCgugGACGcCCUAcccuGGCGCGu -3'
miRNA:   3'- aUACCCG-CGaa-CUGUaGGAU----CUGCGC- -5'
24727 3' -54 NC_005264.1 + 83235 0.69 0.863017
Target:  5'- cGUGGGCGuCUaGGCcgCCgcuGAUGCGc -3'
miRNA:   3'- aUACCCGC-GAaCUGuaGGau-CUGCGC- -5'
24727 3' -54 NC_005264.1 + 3619 0.69 0.855186
Target:  5'- gGUGGGCGCUgugGGCGggguggggguuUCUgGGAgGCGg -3'
miRNA:   3'- aUACCCGCGAa--CUGU-----------AGGaUCUgCGC- -5'
24727 3' -54 NC_005264.1 + 94607 0.7 0.830463
Target:  5'- --cGGGCaugGCUUGGCGgugcggCgUGGACGCGc -3'
miRNA:   3'- auaCCCG---CGAACUGUa-----GgAUCUGCGC- -5'
24727 3' -54 NC_005264.1 + 21524 0.7 0.81303
Target:  5'- aGUGGGCGCagguguagUUGACGcuUCgUGGGCGaCGg -3'
miRNA:   3'- aUACCCGCG--------AACUGU--AGgAUCUGC-GC- -5'
24727 3' -54 NC_005264.1 + 21319 0.71 0.756928
Target:  5'- uUAUGGGUGCaguugUGGCGcCCgUAGAUGCGc -3'
miRNA:   3'- -AUACCCGCGa----ACUGUaGG-AUCUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.