miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24727 5' -59.7 NC_005264.1 + 101562 0.66 0.786541
Target:  5'- aUCUCGaaCCUcuggaauacggGUACGCCgaGGCGCgCCg -3'
miRNA:   3'- cGGAGCaaGGG-----------CAUGCGGa-CCGCG-GG- -5'
24727 5' -59.7 NC_005264.1 + 60335 0.66 0.786541
Target:  5'- cGCCgUUGUcuUCCCcga-GCCcauaGGCGCCCg -3'
miRNA:   3'- -CGG-AGCA--AGGGcaugCGGa---CCGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 53734 0.66 0.777672
Target:  5'- cGUCUCGUcgugCCCGU-CuCC-GGCGCCg -3'
miRNA:   3'- -CGGAGCAa---GGGCAuGcGGaCCGCGGg -5'
24727 5' -59.7 NC_005264.1 + 35509 0.66 0.775883
Target:  5'- cGCCgCGgcgcaggugccCCCGU-CGCCcacgGGCGCCUu -3'
miRNA:   3'- -CGGaGCaa---------GGGCAuGCGGa---CCGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 154536 0.66 0.775883
Target:  5'- cGCCgCGgcgcaggugccCCCGU-CGCCcacgGGCGCCUu -3'
miRNA:   3'- -CGGaGCaa---------GGGCAuGCGGa---CCGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 86145 0.67 0.759581
Target:  5'- aGCCUCG-UCaCgGUGggcgacaGCCUGGUGgCCg -3'
miRNA:   3'- -CGGAGCaAG-GgCAUg------CGGACCGCgGG- -5'
24727 5' -59.7 NC_005264.1 + 161230 0.67 0.750375
Target:  5'- cGCCcacCGgcgUCCCGUAUcCCUGGC-CCa -3'
miRNA:   3'- -CGGa--GCa--AGGGCAUGcGGACCGcGGg -5'
24727 5' -59.7 NC_005264.1 + 157766 0.67 0.750375
Target:  5'- cGCCaacccaCGUUCCaucgGCGUCUucccagcuaggcGGCGCCCa -3'
miRNA:   3'- -CGGa-----GCAAGGgca-UGCGGA------------CCGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 42203 0.67 0.750375
Target:  5'- cGCCcacCGgcgUCCCGUAUcCCUGGC-CCa -3'
miRNA:   3'- -CGGa--GCa--AGGGCAUGcGGACCGcGGg -5'
24727 5' -59.7 NC_005264.1 + 143435 0.67 0.749449
Target:  5'- cGCCUCGccUCCCccaucauGU-CGCCaauGCGCCCc -3'
miRNA:   3'- -CGGAGCa-AGGG-------CAuGCGGac-CGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 11765 0.67 0.744805
Target:  5'- gGUCUC---UCCGgGCGCCUGGCucgcacuccggggcaGCCCg -3'
miRNA:   3'- -CGGAGcaaGGGCaUGCGGACCG---------------CGGG- -5'
24727 5' -59.7 NC_005264.1 + 130791 0.67 0.744805
Target:  5'- gGUCUC---UCCGgGCGCCUGGCucgcacuccggggcaGCCCg -3'
miRNA:   3'- -CGGAGcaaGGGCaUGCGGACCG---------------CGGG- -5'
24727 5' -59.7 NC_005264.1 + 102520 0.67 0.741074
Target:  5'- aUCUCGacgaUCCCaUACGCCccggucGCGCCCg -3'
miRNA:   3'- cGGAGCa---AGGGcAUGCGGac----CGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 74612 0.67 0.740138
Target:  5'- cGCCUgaccccaCGUUCCC-----CCUGGCGCUCa -3'
miRNA:   3'- -CGGA-------GCAAGGGcaugcGGACCGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 23376 0.67 0.731684
Target:  5'- gGUC-CGaUCCagacACGCCUGGCcGCCCu -3'
miRNA:   3'- -CGGaGCaAGGgca-UGCGGACCG-CGGG- -5'
24727 5' -59.7 NC_005264.1 + 43112 0.67 0.731684
Target:  5'- uGUCUC--UCUCGUACGCgC-GGUGCCUg -3'
miRNA:   3'- -CGGAGcaAGGGCAUGCG-GaCCGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 162139 0.67 0.731684
Target:  5'- uGUCUC--UCUCGUACGCgC-GGUGCCUg -3'
miRNA:   3'- -CGGAGcaAGGGCAUGCG-GaCCGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 31404 0.67 0.731684
Target:  5'- uCUUCGUUCCCGUua-CCUGcCGCCg -3'
miRNA:   3'- cGGAGCAAGGGCAugcGGACcGCGGg -5'
24727 5' -59.7 NC_005264.1 + 142684 0.67 0.731684
Target:  5'- uGCCgCGaUCuuGgGCGCCggcGGCGCgCCa -3'
miRNA:   3'- -CGGaGCaAGggCaUGCGGa--CCGCG-GG- -5'
24727 5' -59.7 NC_005264.1 + 23413 0.67 0.722216
Target:  5'- gGCCgagcaCgCGUACGCCagcGGUGCCCg -3'
miRNA:   3'- -CGGagcaaGgGCAUGCGGa--CCGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.