Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24728 | 3' | -50.3 | NC_005264.1 | + | 27446 | 0.67 | 0.99058 |
Target: 5'- cAGCcAGAccugcgCCGAg-CGGCGCAGCa -3' miRNA: 3'- -UUGuUCUcaaa--GGCUaaGCCGCGUCG- -5' |
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24728 | 3' | -50.3 | NC_005264.1 | + | 119756 | 0.67 | 0.99058 |
Target: 5'- cGGCAAGGcGgcUCUGG-UCGGCGUAGa -3' miRNA: 3'- -UUGUUCU-CaaAGGCUaAGCCGCGUCg -5' |
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24728 | 3' | -50.3 | NC_005264.1 | + | 44909 | 0.67 | 0.986094 |
Target: 5'- gGGCGGGAGgaga-GAUcCGGCGCAaGCg -3' miRNA: 3'- -UUGUUCUCaaaggCUAaGCCGCGU-CG- -5' |
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24728 | 3' | -50.3 | NC_005264.1 | + | 1616 | 0.68 | 0.984283 |
Target: 5'- uACGGGAcg--CCGGUg-GGCGCGGCu -3' miRNA: 3'- uUGUUCUcaaaGGCUAagCCGCGUCG- -5' |
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24728 | 3' | -50.3 | NC_005264.1 | + | 62259 | 0.68 | 0.984283 |
Target: 5'- uGGCGAcGGUUUCCGAgaCGauCGCGGCa -3' miRNA: 3'- -UUGUUcUCAAAGGCUaaGCc-GCGUCG- -5' |
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24728 | 3' | -50.3 | NC_005264.1 | + | 120643 | 0.68 | 0.984283 |
Target: 5'- uACGGGAcg--CCGGUg-GGCGCGGCu -3' miRNA: 3'- uUGUUCUcaaaGGCUAagCCGCGUCG- -5' |
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24728 | 3' | -50.3 | NC_005264.1 | + | 136227 | 0.68 | 0.982297 |
Target: 5'- uAACGGGAGgg-CCGAggUGGCGaCGGa -3' miRNA: 3'- -UUGUUCUCaaaGGCUaaGCCGC-GUCg -5' |
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24728 | 3' | -50.3 | NC_005264.1 | + | 37372 | 0.68 | 0.980129 |
Target: 5'- gAGCGAGcc--UCCGAgcagGGCGCGGCa -3' miRNA: 3'- -UUGUUCucaaAGGCUaag-CCGCGUCG- -5' |
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24728 | 3' | -50.3 | NC_005264.1 | + | 111959 | 0.68 | 0.977769 |
Target: 5'- uGCAGGAGcg-CCGAgaaguaguagUCGGCGUuaAGCc -3' miRNA: 3'- uUGUUCUCaaaGGCUa---------AGCCGCG--UCG- -5' |
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24728 | 3' | -50.3 | NC_005264.1 | + | 20251 | 0.69 | 0.969452 |
Target: 5'- gGGCAGGGGUUg------CGGCGCGGCc -3' miRNA: 3'- -UUGUUCUCAAaggcuaaGCCGCGUCG- -5' |
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24728 | 3' | -50.3 | NC_005264.1 | + | 122048 | 0.69 | 0.962801 |
Target: 5'- cGGCAAGcGgcUCCGcucUCGGCGCcGCg -3' miRNA: 3'- -UUGUUCuCaaAGGCua-AGCCGCGuCG- -5' |
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24728 | 3' | -50.3 | NC_005264.1 | + | 83851 | 0.69 | 0.959124 |
Target: 5'- cGGCAGGuaacUCCuuaguUUCGGCGCGGCa -3' miRNA: 3'- -UUGUUCucaaAGGcu---AAGCCGCGUCG- -5' |
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24728 | 3' | -50.3 | NC_005264.1 | + | 157669 | 0.71 | 0.912842 |
Target: 5'- cGCGAGGGccUCCGAaaggcuucggacgaUgCGGCGCGGCc -3' miRNA: 3'- uUGUUCUCaaAGGCU--------------AaGCCGCGUCG- -5' |
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24728 | 3' | -50.3 | NC_005264.1 | + | 42223 | 0.72 | 0.888226 |
Target: 5'- ----cGGGUUUCCGAggCGGCuaaacaGCGGCa -3' miRNA: 3'- uuguuCUCAAAGGCUaaGCCG------CGUCG- -5' |
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24728 | 3' | -50.3 | NC_005264.1 | + | 152767 | 0.72 | 0.873504 |
Target: 5'- cGGCGGGAGaUUCCGccgCGGCuGCAGUu -3' miRNA: 3'- -UUGUUCUCaAAGGCuaaGCCG-CGUCG- -5' |
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24728 | 3' | -50.3 | NC_005264.1 | + | 55807 | 0.73 | 0.835292 |
Target: 5'- uACGAGAGcaacucaacauucagCCGGUggCGGCGCGGCu -3' miRNA: 3'- uUGUUCUCaaa------------GGCUAa-GCCGCGUCG- -5' |
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24728 | 3' | -50.3 | NC_005264.1 | + | 133380 | 0.77 | 0.674725 |
Target: 5'- cGGCGAGAGUcaUCGcggCGGCGCAGCc -3' miRNA: 3'- -UUGUUCUCAaaGGCuaaGCCGCGUCG- -5' |
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24728 | 3' | -50.3 | NC_005264.1 | + | 137867 | 1.11 | 0.007335 |
Target: 5'- aAACAAGAGUUUCCGAUUCGGCGCAGCg -3' miRNA: 3'- -UUGUUCUCAAAGGCUAAGCCGCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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