miRNA display CGI


Results 41 - 60 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24729 3' -52.1 NC_005264.1 + 101161 0.66 0.981453
Target:  5'- gGCAC---UGUGCGAGAUAGGCGAgGa -3'
miRNA:   3'- aCGUGcgcGCGCGCUUUAUCUGUUgC- -5'
24729 3' -52.1 NC_005264.1 + 4086 0.66 0.983467
Target:  5'- uUGCACGgGCG-GCGucgcGGcACGACGg -3'
miRNA:   3'- -ACGUGCgCGCgCGCuuuaUC-UGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 74299 0.66 0.983467
Target:  5'- aGCgGCGgucugGCGCGCGgcAUGGcCAACGa -3'
miRNA:   3'- aCG-UGCg----CGCGCGCuuUAUCuGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 29283 0.66 0.983467
Target:  5'- cUGUGCGCGgGCGCGugccu--CGACGu -3'
miRNA:   3'- -ACGUGCGCgCGCGCuuuaucuGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 30404 0.66 0.983467
Target:  5'- cGguCGCGCGCcgguGCGGAG-AGcuGCGGCGg -3'
miRNA:   3'- aCguGCGCGCG----CGCUUUaUC--UGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 156687 0.66 0.983467
Target:  5'- uUGUACaGCcCGCGCGAGAcccaGGACGgGCGg -3'
miRNA:   3'- -ACGUG-CGcGCGCGCUUUa---UCUGU-UGC- -5'
24729 3' -52.1 NC_005264.1 + 126554 0.66 0.988525
Target:  5'- gGCucuuCGCGC-CGCGA---AGACGugGu -3'
miRNA:   3'- aCGu---GCGCGcGCGCUuuaUCUGUugC- -5'
24729 3' -52.1 NC_005264.1 + 46588 0.67 0.968232
Target:  5'- cGCGCGUGCGgaggcucugucccUGCGggGcgaGGACGGCu -3'
miRNA:   3'- aCGUGCGCGC-------------GCGCuuUa--UCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 36259 0.67 0.968542
Target:  5'- aGCugGCGCGaucuGCcGAAgaGUGGACcACGu -3'
miRNA:   3'- aCGugCGCGCg---CG-CUU--UAUCUGuUGC- -5'
24729 3' -52.1 NC_005264.1 + 107212 0.67 0.968542
Target:  5'- gGCG-GCGCGCGCGGuu--GGCAuuCGg -3'
miRNA:   3'- aCGUgCGCGCGCGCUuuauCUGUu-GC- -5'
24729 3' -52.1 NC_005264.1 + 73835 0.67 0.97926
Target:  5'- aUGCGCGaGCuGCGCGAuucagcAUAGcCAACa -3'
miRNA:   3'- -ACGUGCgCG-CGCGCUu-----UAUCuGUUGc -5'
24729 3' -52.1 NC_005264.1 + 147536 0.67 0.977855
Target:  5'- aGCGauacggaaucuuuccCGCG-GCGCGAAGUGGccgccgacguguGCGACGg -3'
miRNA:   3'- aCGU---------------GCGCgCGCGCUUUAUC------------UGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 95975 0.67 0.97688
Target:  5'- cUGCucuC-CGCGCGCGAucuAUuuucgcgucGGGCGACGg -3'
miRNA:   3'- -ACGu--GcGCGCGCGCUu--UA---------UCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 136653 0.67 0.97688
Target:  5'- aGCcuCGaCGCGCGUGGAGUAaaACAAUGg -3'
miRNA:   3'- aCGu-GC-GCGCGCGCUUUAUc-UGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 53613 0.67 0.97688
Target:  5'- aGgACGCGCgGUGgGAGAUGGGaGACa -3'
miRNA:   3'- aCgUGCGCG-CGCgCUUUAUCUgUUGc -5'
24729 3' -52.1 NC_005264.1 + 138336 0.67 0.976631
Target:  5'- --gGCGCGUGCGCGAca-AGGCGcccgaacGCGa -3'
miRNA:   3'- acgUGCGCGCGCGCUuuaUCUGU-------UGC- -5'
24729 3' -52.1 NC_005264.1 + 123100 0.67 0.975359
Target:  5'- cGCACGUGCGCucCGggGgcaucgaguacuacuUGGcCAACGg -3'
miRNA:   3'- aCGUGCGCGCGc-GCuuU---------------AUCuGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 99026 0.67 0.97926
Target:  5'- aGCugGUcgaGCGCGCGGcagaAAUcGugGACGc -3'
miRNA:   3'- aCGugCG---CGCGCGCU----UUAuCugUUGC- -5'
24729 3' -52.1 NC_005264.1 + 115230 0.67 0.97926
Target:  5'- aUGUACGCGCcguucGCGCGAGucuccccCAACGc -3'
miRNA:   3'- -ACGUGCGCG-----CGCGCUUuaucu--GUUGC- -5'
24729 3' -52.1 NC_005264.1 + 84894 0.67 0.97688
Target:  5'- aGCGgGC-CGCGCaGGAcgGGAgGGCGg -3'
miRNA:   3'- aCGUgCGcGCGCG-CUUuaUCUgUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.