miRNA display CGI


Results 81 - 100 of 194 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24729 3' -52.1 NC_005264.1 + 138214 0.68 0.96534
Target:  5'- aGCAUGCGCuGCGCGGu---GACcaauCGg -3'
miRNA:   3'- aCGUGCGCG-CGCGCUuuauCUGuu--GC- -5'
24729 3' -52.1 NC_005264.1 + 26792 0.68 0.953571
Target:  5'- cUGCACGCGgGCuuccacgaggaGAAGUGGGCcGCGc -3'
miRNA:   3'- -ACGUGCGCgCGcg---------CUUUAUCUGuUGC- -5'
24729 3' -52.1 NC_005264.1 + 129594 0.68 0.951931
Target:  5'- cUGCAgGCGCugcgGCGCGGcggcgaagcuucucgAGUAGACGcCGa -3'
miRNA:   3'- -ACGUgCGCG----CGCGCU---------------UUAUCUGUuGC- -5'
24729 3' -52.1 NC_005264.1 + 154135 0.68 0.950253
Target:  5'- gGcCACGCGCGCGCaGAGcgAGuucuuCAAgGg -3'
miRNA:   3'- aC-GUGCGCGCGCG-CUUuaUCu----GUUgC- -5'
24729 3' -52.1 NC_005264.1 + 66848 0.68 0.96534
Target:  5'- cGCcguCGCcCGaCGCGAAAUAGAUcGCGc -3'
miRNA:   3'- aCGu--GCGcGC-GCGCUUUAUCUGuUGC- -5'
24729 3' -52.1 NC_005264.1 + 143075 0.68 0.950253
Target:  5'- aGCAUGCGUgucacaaucgcgGCGCGAugcuggGGGCAcgGCGa -3'
miRNA:   3'- aCGUGCGCG------------CGCGCUuua---UCUGU--UGC- -5'
24729 3' -52.1 NC_005264.1 + 97215 0.68 0.949827
Target:  5'- gUGCGCGCGCGgguacccacgagcCGCGAAcgcaGCAGCa -3'
miRNA:   3'- -ACGUGCGCGC-------------GCGCUUuaucUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 12969 0.68 0.954376
Target:  5'- gGCGCGCGC-CGCcGAc---GACGACGc -3'
miRNA:   3'- aCGUGCGCGcGCG-CUuuauCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 120781 0.68 0.954376
Target:  5'- cGcCACGCGC-CGCGGgcaacgcgauugGAUAGGCcGCGu -3'
miRNA:   3'- aC-GUGCGCGcGCGCU------------UUAUCUGuUGC- -5'
24729 3' -52.1 NC_005264.1 + 117289 0.68 0.956349
Target:  5'- cGUACGCGUGCGCGAugccgcucuccgcguGCGACu -3'
miRNA:   3'- aCGUGCGCGCGCGCUuuauc----------UGUUGc -5'
24729 3' -52.1 NC_005264.1 + 4325 0.68 0.963312
Target:  5'- gGCAgGUGCGCgaaagguagcuuaucGCGAuaGAUAGuCGGCGg -3'
miRNA:   3'- aCGUgCGCGCG---------------CGCU--UUAUCuGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 20818 0.68 0.958262
Target:  5'- aUGCACGCcaauCGCGCG-----GACGGCGa -3'
miRNA:   3'- -ACGUGCGc---GCGCGCuuuauCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 116267 0.68 0.959751
Target:  5'- cGCACGCGCgacuuggaagccgugGCGCGGGcggcuacggcuGUGGccuuCGACGg -3'
miRNA:   3'- aCGUGCGCG---------------CGCGCUU-----------UAUCu---GUUGC- -5'
24729 3' -52.1 NC_005264.1 + 93350 0.68 0.957884
Target:  5'- gGCACGCGUGUauggauaugugcgGCGAAugGGGCGAg- -3'
miRNA:   3'- aCGUGCGCGCG-------------CGCUUuaUCUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 96892 0.68 0.961915
Target:  5'- gGCAUgGCgGCGCGCGAGGgc-GCGGCa -3'
miRNA:   3'- aCGUG-CG-CGCGCGCUUUaucUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 44530 0.68 0.96534
Target:  5'- cGCuACGaCGCGCGCGAGuacaucaccgAGACGucaaACGc -3'
miRNA:   3'- aCG-UGC-GCGCGCGCUUua--------UCUGU----UGC- -5'
24729 3' -52.1 NC_005264.1 + 81796 0.68 0.954376
Target:  5'- -cCACGCGC-CaGUGAgGGUAGACGGCGg -3'
miRNA:   3'- acGUGCGCGcG-CGCU-UUAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 154923 0.68 0.961915
Target:  5'- gUGgACGCGCGCGUugcuagccaGAGcGUGGGgGACGu -3'
miRNA:   3'- -ACgUGCGCGCGCG---------CUU-UAUCUgUUGC- -5'
24729 3' -52.1 NC_005264.1 + 33508 0.69 0.925965
Target:  5'- gUGCGCGuCGCuGCGCccGGUAGGCGAg- -3'
miRNA:   3'- -ACGUGC-GCG-CGCGcuUUAUCUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 21261 0.69 0.936423
Target:  5'- gUGCGCGC-CGCG-GAGGUGG-UAACGc -3'
miRNA:   3'- -ACGUGCGcGCGCgCUUUAUCuGUUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.