miRNA display CGI


Results 101 - 120 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24729 3' -52.1 NC_005264.1 + 62483 0.69 0.941279
Target:  5'- cGCGuCGUGCGCGCGuccucuACGGCGu -3'
miRNA:   3'- aCGU-GCGCGCGCGCuuuaucUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 36211 0.69 0.931319
Target:  5'- cGCAUGCGCGCagaccagagcccGCGAGGUuuagGGGCGGa- -3'
miRNA:   3'- aCGUGCGCGCG------------CGCUUUA----UCUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 1171 0.69 0.941279
Target:  5'- cUGC-CG-GCGCGCGAugggGGUAcGCAGCGg -3'
miRNA:   3'- -ACGuGCgCGCGCGCU----UUAUcUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 130442 0.69 0.941279
Target:  5'- aGCcgAUGCGCGCGUGGAGgagcUGGuuuguCGACGa -3'
miRNA:   3'- aCG--UGCGCGCGCGCUUU----AUCu----GUUGC- -5'
24729 3' -52.1 NC_005264.1 + 95731 0.69 0.941279
Target:  5'- aGCAaGCGCGgGCGcuggAGACGGCc -3'
miRNA:   3'- aCGUgCGCGCgCGCuuuaUCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 54058 0.69 0.941279
Target:  5'- cGCaACGCGUGCGCGAuucgcaAGAU-ACGc -3'
miRNA:   3'- aCG-UGCGCGCGCGCUuua---UCUGuUGC- -5'
24729 3' -52.1 NC_005264.1 + 121370 0.69 0.936423
Target:  5'- cGCACGUaCGCacacGCGGAAUGGAUgguuAGCGa -3'
miRNA:   3'- aCGUGCGcGCG----CGCUUUAUCUG----UUGC- -5'
24729 3' -52.1 NC_005264.1 + 110845 0.69 0.936423
Target:  5'- cGCucCGCGCGCGaCGuccgcAAUAGcuACAGCGa -3'
miRNA:   3'- aCGu-GCGCGCGC-GCu----UUAUC--UGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 18942 0.69 0.931319
Target:  5'- aUGCGucaGCGCagauGgGCGAAAUGGGCcGCGg -3'
miRNA:   3'- -ACGUg--CGCG----CgCGCUUUAUCUGuUGC- -5'
24729 3' -52.1 NC_005264.1 + 119729 0.69 0.925965
Target:  5'- gGCAcCGCGCGUaCGAGAgAGACAGa- -3'
miRNA:   3'- aCGU-GCGCGCGcGCUUUaUCUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 132892 0.69 0.943152
Target:  5'- gGCAUGCuGUGaGCGAAggcugcccugcguuaAUGGACAACGc -3'
miRNA:   3'- aCGUGCG-CGCgCGCUU---------------UAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 114300 0.69 0.945888
Target:  5'- gGCgACGgGgGCGCGcg--GGACGACGc -3'
miRNA:   3'- aCG-UGCgCgCGCGCuuuaUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 21720 0.69 0.931319
Target:  5'- gGC-CGUGCGCGCaGGAGUAGAgGu-- -3'
miRNA:   3'- aCGuGCGCGCGCG-CUUUAUCUgUugc -5'
24729 3' -52.1 NC_005264.1 + 155238 0.69 0.931319
Target:  5'- cGCAUGCGCGCagaccagagcccGCGAGGUuuagGGGCGGa- -3'
miRNA:   3'- aCGUGCGCGCG------------CGCUUUA----UCUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 152535 0.69 0.925965
Target:  5'- gUGCGCGuCGCuGCGCccGGUAGGCGAg- -3'
miRNA:   3'- -ACGUGC-GCG-CGCGcuUUAUCUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 33508 0.69 0.925965
Target:  5'- gUGCGCGuCGCuGCGCccGGUAGGCGAg- -3'
miRNA:   3'- -ACGUGC-GCG-CGCGcuUUAUCUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 21261 0.69 0.936423
Target:  5'- gUGCGCGC-CGCG-GAGGUGG-UAACGc -3'
miRNA:   3'- -ACGUGCGcGCGCgCUUUAUCuGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 101923 0.69 0.941279
Target:  5'- aGCAaaaUG-GCGCGCGAAAcuGGCGGCGu -3'
miRNA:   3'- aCGU---GCgCGCGCGCUUUauCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 95336 0.69 0.941279
Target:  5'- cGC-CGgGCGcCGCGAAAcGGACucgGCGg -3'
miRNA:   3'- aCGuGCgCGC-GCGCUUUaUCUGu--UGC- -5'
24729 3' -52.1 NC_005264.1 + 49240 0.69 0.941279
Target:  5'- aUGCACGaGUGCGCGGcAGUuggcgaguGACAGCu -3'
miRNA:   3'- -ACGUGCgCGCGCGCU-UUAu-------CUGUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.