miRNA display CGI


Results 121 - 140 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24729 3' -52.1 NC_005264.1 + 95336 0.69 0.941279
Target:  5'- cGC-CGgGCGcCGCGAAAcGGACucgGCGg -3'
miRNA:   3'- aCGuGCgCGC-GCGCUUUaUCUGu--UGC- -5'
24729 3' -52.1 NC_005264.1 + 132892 0.69 0.943152
Target:  5'- gGCAUGCuGUGaGCGAAggcugcccugcguuaAUGGACAACGc -3'
miRNA:   3'- aCGUGCG-CGCgCGCUU---------------UAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 114300 0.69 0.945888
Target:  5'- gGCgACGgGgGCGCGcg--GGACGACGc -3'
miRNA:   3'- aCG-UGCgCgCGCGCuuuaUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 19484 0.69 0.941279
Target:  5'- aUGCugACGCGCaccUGCGAGGUuccagcugccAGACGACGa -3'
miRNA:   3'- -ACG--UGCGCGc--GCGCUUUA----------UCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 120198 0.69 0.941279
Target:  5'- cUGC-CG-GCGCGCGAugggGGUAcGCAGCGg -3'
miRNA:   3'- -ACGuGCgCGCGCGCU----UUAUcUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 62483 0.69 0.941279
Target:  5'- cGCGuCGUGCGCGCGuccucuACGGCGu -3'
miRNA:   3'- aCGU-GCGCGCGCGCuuuaucUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 44944 0.7 0.902062
Target:  5'- gGCccguUGCGCGCGUGAcucccuucguGGUAGAgCGGCGg -3'
miRNA:   3'- aCGu---GCGCGCGCGCU----------UUAUCU-GUUGC- -5'
24729 3' -52.1 NC_005264.1 + 123289 0.7 0.920362
Target:  5'- gGCuuGC-CGCGCGGGAaccgcgGGGCGGCGg -3'
miRNA:   3'- aCGugCGcGCGCGCUUUa-----UCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 99596 0.7 0.914509
Target:  5'- gGCAUGCuGgGCGCuucGAUGGACAugGc -3'
miRNA:   3'- aCGUGCG-CgCGCGcu-UUAUCUGUugC- -5'
24729 3' -52.1 NC_005264.1 + 22141 0.7 0.902062
Target:  5'- aGCGCGaCGCGCGCcu--UAGAUuGCGc -3'
miRNA:   3'- aCGUGC-GCGCGCGcuuuAUCUGuUGC- -5'
24729 3' -52.1 NC_005264.1 + 28046 0.7 0.900111
Target:  5'- cGCGCGCgacgccggguaaaaGCGCGCGGAAgcGAacACGg -3'
miRNA:   3'- aCGUGCG--------------CGCGCGCUUUauCUguUGC- -5'
24729 3' -52.1 NC_005264.1 + 128582 0.7 0.914509
Target:  5'- aGCACGCGgauuacCGCGCGcAcgAGGCGggACGa -3'
miRNA:   3'- aCGUGCGC------GCGCGCuUuaUCUGU--UGC- -5'
24729 3' -52.1 NC_005264.1 + 23284 0.7 0.912705
Target:  5'- cGCGCGCGUGCaGCGAgcgcaaacaucgccAcgAGuGCGGCGg -3'
miRNA:   3'- aCGUGCGCGCG-CGCU--------------UuaUC-UGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 4262 0.7 0.920362
Target:  5'- gGCuuGC-CGCGCGGGAaccgcgGGGCGGCGg -3'
miRNA:   3'- aCGugCGcGCGCGCUUUa-----UCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 83193 0.7 0.914509
Target:  5'- gGCAgGCGCgGCGCGAAcuaugcgcuuuuAUGGGCcguuGCGc -3'
miRNA:   3'- aCGUgCGCG-CGCGCUU------------UAUCUGu---UGC- -5'
24729 3' -52.1 NC_005264.1 + 104363 0.71 0.850249
Target:  5'- cGCAUGCGUuaaugucGCGCGGcaGAUAGGCuGGCGc -3'
miRNA:   3'- aCGUGCGCG-------CGCGCU--UUAUCUG-UUGC- -5'
24729 3' -52.1 NC_005264.1 + 157018 0.71 0.888643
Target:  5'- aGCuuuCGCGguucuUGCGCGAAAUAGAguACa -3'
miRNA:   3'- aCGu--GCGC-----GCGCGCUUUAUCUguUGc -5'
24729 3' -52.1 NC_005264.1 + 142744 0.71 0.866757
Target:  5'- gGCuauACGCGCGUGgGAGAcaUGGACAAg- -3'
miRNA:   3'- aCG---UGCGCGCGCgCUUU--AUCUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 131135 0.71 0.874281
Target:  5'- aGUACGCcccGCGCGCGAccuuuGGcGGGCAGCc -3'
miRNA:   3'- aCGUGCG---CGCGCGCU-----UUaUCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 118312 0.71 0.874281
Target:  5'- aUGUACuCGCGCGCGucGUAGcgguacgaguacACGACGg -3'
miRNA:   3'- -ACGUGcGCGCGCGCuuUAUC------------UGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.