Results 61 - 80 of 194 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24729 | 3' | -52.1 | NC_005264.1 | + | 128582 | 0.7 | 0.914509 |
Target: 5'- aGCACGCGgauuacCGCGCGcAcgAGGCGggACGa -3' miRNA: 3'- aCGUGCGC------GCGCGCuUuaUCUGU--UGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 83193 | 0.7 | 0.914509 |
Target: 5'- gGCAgGCGCgGCGCGAAcuaugcgcuuuuAUGGGCcguuGCGc -3' miRNA: 3'- aCGUgCGCG-CGCGCUU------------UAUCUGu---UGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 4262 | 0.7 | 0.920362 |
Target: 5'- gGCuuGC-CGCGCGGGAaccgcgGGGCGGCGg -3' miRNA: 3'- aCGugCGcGCGCGCUUUa-----UCUGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 99596 | 0.7 | 0.914509 |
Target: 5'- gGCAUGCuGgGCGCuucGAUGGACAugGc -3' miRNA: 3'- aCGUGCG-CgCGCGcu-UUAUCUGUugC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 28046 | 0.7 | 0.900111 |
Target: 5'- cGCGCGCgacgccggguaaaaGCGCGCGGAAgcGAacACGg -3' miRNA: 3'- aCGUGCG--------------CGCGCGCUUUauCUguUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 22141 | 0.7 | 0.902062 |
Target: 5'- aGCGCGaCGCGCGCcu--UAGAUuGCGc -3' miRNA: 3'- aCGUGC-GCGCGCGcuuuAUCUGuUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 44944 | 0.7 | 0.902062 |
Target: 5'- gGCccguUGCGCGCGUGAcucccuucguGGUAGAgCGGCGg -3' miRNA: 3'- aCGu---GCGCGCGCGCU----------UUAUCU-GUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 123289 | 0.7 | 0.920362 |
Target: 5'- gGCuuGC-CGCGCGGGAaccgcgGGGCGGCGg -3' miRNA: 3'- aCGugCGcGCGCGCUUUa-----UCUGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 49240 | 0.69 | 0.941279 |
Target: 5'- aUGCACGaGUGCGCGGcAGUuggcgaguGACAGCu -3' miRNA: 3'- -ACGUGCgCGCGCGCU-UUAu-------CUGUUGc -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 96985 | 0.69 | 0.945888 |
Target: 5'- gUGCGCGUuCGCGUGGGAaGGGCGuauCGu -3' miRNA: 3'- -ACGUGCGcGCGCGCUUUaUCUGUu--GC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 101923 | 0.69 | 0.941279 |
Target: 5'- aGCAaaaUG-GCGCGCGAAAcuGGCGGCGu -3' miRNA: 3'- aCGU---GCgCGCGCGCUUUauCUGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 121370 | 0.69 | 0.936423 |
Target: 5'- cGCACGUaCGCacacGCGGAAUGGAUgguuAGCGa -3' miRNA: 3'- aCGUGCGcGCG----CGCUUUAUCUG----UUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 95336 | 0.69 | 0.941279 |
Target: 5'- cGC-CGgGCGcCGCGAAAcGGACucgGCGg -3' miRNA: 3'- aCGuGCgCGC-GCGCUUUaUCUGu--UGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 130442 | 0.69 | 0.941279 |
Target: 5'- aGCcgAUGCGCGCGUGGAGgagcUGGuuuguCGACGa -3' miRNA: 3'- aCG--UGCGCGCGCGCUUU----AUCu----GUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 95731 | 0.69 | 0.941279 |
Target: 5'- aGCAaGCGCGgGCGcuggAGACGGCc -3' miRNA: 3'- aCGUgCGCGCgCGCuuuaUCUGUUGc -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 54058 | 0.69 | 0.941279 |
Target: 5'- cGCaACGCGUGCGCGAuucgcaAGAU-ACGc -3' miRNA: 3'- aCG-UGCGCGCGCGCUuua---UCUGuUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 1171 | 0.69 | 0.941279 |
Target: 5'- cUGC-CG-GCGCGCGAugggGGUAcGCAGCGg -3' miRNA: 3'- -ACGuGCgCGCGCGCU----UUAUcUGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 36211 | 0.69 | 0.931319 |
Target: 5'- cGCAUGCGCGCagaccagagcccGCGAGGUuuagGGGCGGa- -3' miRNA: 3'- aCGUGCGCGCG------------CGCUUUA----UCUGUUgc -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 33508 | 0.69 | 0.925965 |
Target: 5'- gUGCGCGuCGCuGCGCccGGUAGGCGAg- -3' miRNA: 3'- -ACGUGC-GCG-CGCGcuUUAUCUGUUgc -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 21261 | 0.69 | 0.936423 |
Target: 5'- gUGCGCGC-CGCG-GAGGUGG-UAACGc -3' miRNA: 3'- -ACGUGCGcGCGCgCUUUAUCuGUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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