miRNA display CGI


Results 41 - 60 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24729 3' -52.1 NC_005264.1 + 150865 0.72 0.842892
Target:  5'- cGUGC-CGCGCGCGGca-AGACAugGg -3'
miRNA:   3'- aCGUGcGCGCGCGCUuuaUCUGUugC- -5'
24729 3' -52.1 NC_005264.1 + 31839 0.72 0.842892
Target:  5'- cGUGC-CGCGCGCGGca-AGACAugGg -3'
miRNA:   3'- aCGUGcGCGCGCGCUuuaUCUGUugC- -5'
24729 3' -52.1 NC_005264.1 + 104363 0.71 0.850249
Target:  5'- cGCAUGCGUuaaugucGCGCGGcaGAUAGGCuGGCGc -3'
miRNA:   3'- aCGUGCGCG-------CGCGCU--UUAUCUG-UUGC- -5'
24729 3' -52.1 NC_005264.1 + 154184 0.71 0.851057
Target:  5'- aGCAUGCccgaauacuuCGCGCGAAacGUAGACGugGc -3'
miRNA:   3'- aCGUGCGc---------GCGCGCUU--UAUCUGUugC- -5'
24729 3' -52.1 NC_005264.1 + 99737 0.71 0.866757
Target:  5'- -aUACGCGUGCGCacGAGGUAGGCcuuuccgcGACGg -3'
miRNA:   3'- acGUGCGCGCGCG--CUUUAUCUG--------UUGC- -5'
24729 3' -52.1 NC_005264.1 + 142744 0.71 0.866757
Target:  5'- gGCuauACGCGCGUGgGAGAcaUGGACAAg- -3'
miRNA:   3'- aCG---UGCGCGCGCgCUUU--AUCUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 112036 0.71 0.866757
Target:  5'- cUGCGCGCGCGC-CGAucc-GACAAg- -3'
miRNA:   3'- -ACGUGCGCGCGcGCUuuauCUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 131135 0.71 0.874281
Target:  5'- aGUACGCcccGCGCGCGAccuuuGGcGGGCAGCc -3'
miRNA:   3'- aCGUGCG---CGCGCGCU-----UUaUCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 12108 0.71 0.874281
Target:  5'- aGUACGCcccGCGCGCGAccuuuGGcGGGCAGCc -3'
miRNA:   3'- aCGUGCG---CGCGCGCU-----UUaUCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 123484 0.71 0.874281
Target:  5'- gGCAUGCGguggcCGCGCGGuugcUGGGCGAUGu -3'
miRNA:   3'- aCGUGCGC-----GCGCGCUuu--AUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 118312 0.71 0.874281
Target:  5'- aUGUACuCGCGCGCGucGUAGcgguacgaguacACGACGg -3'
miRNA:   3'- -ACGUGcGCGCGCGCuuUAUC------------UGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 138439 0.71 0.874281
Target:  5'- cGCGC-CGCGCGCuuacuUGGACGACc -3'
miRNA:   3'- aCGUGcGCGCGCGcuuu-AUCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 16542 0.71 0.881577
Target:  5'- aGCGCuuGCGCGUauuucaGCGcgGUGGGCGGCGc -3'
miRNA:   3'- aCGUG--CGCGCG------CGCuuUAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 111251 0.71 0.881577
Target:  5'- cUGCGCGUauGCGCGgGAAacucgaucGUcGGCAACGg -3'
miRNA:   3'- -ACGUGCG--CGCGCgCUU--------UAuCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 162693 0.71 0.881577
Target:  5'- gGCGCGCuGCGCGCcGgcGUuaAGGCGGCc -3'
miRNA:   3'- aCGUGCG-CGCGCG-CuuUA--UCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 43667 0.71 0.881577
Target:  5'- gGCGCGCuGCGCGCcGgcGUuaAGGCGGCc -3'
miRNA:   3'- aCGUGCG-CGCGCG-CuuUA--UCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 53285 0.71 0.888643
Target:  5'- gGC-CGCGCGgGCuucggGGGCAACGg -3'
miRNA:   3'- aCGuGCGCGCgCGcuuuaUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 157018 0.71 0.888643
Target:  5'- aGCuuuCGCGguucuUGCGCGAAAUAGAguACa -3'
miRNA:   3'- aCGu--GCGC-----GCGCGCUUUAUCUguUGc -5'
24729 3' -52.1 NC_005264.1 + 87161 0.71 0.891403
Target:  5'- aGCAUGCGCGCcGCGGuuucgcgguuuacccAAUcuGGCGACGc -3'
miRNA:   3'- aCGUGCGCGCG-CGCU---------------UUAu-CUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 28046 0.7 0.900111
Target:  5'- cGCGCGCgacgccggguaaaaGCGCGCGGAAgcGAacACGg -3'
miRNA:   3'- aCGUGCG--------------CGCGCGCUUUauCUguUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.