miRNA display CGI


Results 81 - 100 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24729 3' -52.1 NC_005264.1 + 21261 0.69 0.936423
Target:  5'- gUGCGCGC-CGCG-GAGGUGG-UAACGc -3'
miRNA:   3'- -ACGUGCGcGCGCgCUUUAUCuGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 121370 0.69 0.936423
Target:  5'- cGCACGUaCGCacacGCGGAAUGGAUgguuAGCGa -3'
miRNA:   3'- aCGUGCGcGCG----CGCUUUAUCUG----UUGC- -5'
24729 3' -52.1 NC_005264.1 + 130442 0.69 0.941279
Target:  5'- aGCcgAUGCGCGCGUGGAGgagcUGGuuuguCGACGa -3'
miRNA:   3'- aCG--UGCGCGCGCGCUUU----AUCu----GUUGC- -5'
24729 3' -52.1 NC_005264.1 + 120198 0.69 0.941279
Target:  5'- cUGC-CG-GCGCGCGAugggGGUAcGCAGCGg -3'
miRNA:   3'- -ACGuGCgCGCGCGCU----UUAUcUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 19484 0.69 0.941279
Target:  5'- aUGCugACGCGCaccUGCGAGGUuccagcugccAGACGACGa -3'
miRNA:   3'- -ACG--UGCGCGc--GCGCUUUA----------UCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 62483 0.69 0.941279
Target:  5'- cGCGuCGUGCGCGCGuccucuACGGCGu -3'
miRNA:   3'- aCGU-GCGCGCGCGCuuuaucUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 95731 0.69 0.941279
Target:  5'- aGCAaGCGCGgGCGcuggAGACGGCc -3'
miRNA:   3'- aCGUgCGCGCgCGCuuuaUCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 1171 0.69 0.941279
Target:  5'- cUGC-CG-GCGCGCGAugggGGUAcGCAGCGg -3'
miRNA:   3'- -ACGuGCgCGCGCGCU----UUAUcUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 54058 0.69 0.941279
Target:  5'- cGCaACGCGUGCGCGAuucgcaAGAU-ACGc -3'
miRNA:   3'- aCG-UGCGCGCGCGCUuua---UCUGuUGC- -5'
24729 3' -52.1 NC_005264.1 + 49240 0.69 0.941279
Target:  5'- aUGCACGaGUGCGCGGcAGUuggcgaguGACAGCu -3'
miRNA:   3'- -ACGUGCgCGCGCGCU-UUAu-------CUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 95336 0.69 0.941279
Target:  5'- cGC-CGgGCGcCGCGAAAcGGACucgGCGg -3'
miRNA:   3'- aCGuGCgCGC-GCGCUUUaUCUGu--UGC- -5'
24729 3' -52.1 NC_005264.1 + 101923 0.69 0.941279
Target:  5'- aGCAaaaUG-GCGCGCGAAAcuGGCGGCGu -3'
miRNA:   3'- aCGU---GCgCGCGCGCUUUauCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 132892 0.69 0.943152
Target:  5'- gGCAUGCuGUGaGCGAAggcugcccugcguuaAUGGACAACGc -3'
miRNA:   3'- aCGUGCG-CGCgCGCUU---------------UAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 96985 0.69 0.945888
Target:  5'- gUGCGCGUuCGCGUGGGAaGGGCGuauCGu -3'
miRNA:   3'- -ACGUGCGcGCGCGCUUUaUCUGUu--GC- -5'
24729 3' -52.1 NC_005264.1 + 114300 0.69 0.945888
Target:  5'- gGCgACGgGgGCGCGcg--GGACGACGc -3'
miRNA:   3'- aCG-UGCgCgCGCGCuuuaUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 93937 0.69 0.945888
Target:  5'- cGCcacauuCGCGCGCaGCGGAguGUGGAaAGCGa -3'
miRNA:   3'- aCGu-----GCGCGCG-CGCUU--UAUCUgUUGC- -5'
24729 3' -52.1 NC_005264.1 + 97215 0.68 0.949827
Target:  5'- gUGCGCGCGCGgguacccacgagcCGCGAAcgcaGCAGCa -3'
miRNA:   3'- -ACGUGCGCGC-------------GCGCUUuaucUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 154135 0.68 0.950253
Target:  5'- gGcCACGCGCGCGCaGAGcgAGuucuuCAAgGg -3'
miRNA:   3'- aC-GUGCGCGCGCG-CUUuaUCu----GUUgC- -5'
24729 3' -52.1 NC_005264.1 + 143075 0.68 0.950253
Target:  5'- aGCAUGCGUgucacaaucgcgGCGCGAugcuggGGGCAcgGCGa -3'
miRNA:   3'- aCGUGCGCG------------CGCGCUuua---UCUGU--UGC- -5'
24729 3' -52.1 NC_005264.1 + 129594 0.68 0.951931
Target:  5'- cUGCAgGCGCugcgGCGCGGcggcgaagcuucucgAGUAGACGcCGa -3'
miRNA:   3'- -ACGUgCGCG----CGCGCU---------------UUAUCUGUuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.