miRNA display CGI


Results 121 - 140 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24729 3' -52.1 NC_005264.1 + 36259 0.67 0.968542
Target:  5'- aGCugGCGCGaucuGCcGAAgaGUGGACcACGu -3'
miRNA:   3'- aCGugCGCGCg---CG-CUU--UAUCUGuUGC- -5'
24729 3' -52.1 NC_005264.1 + 40286 0.67 0.971529
Target:  5'- cGC-CGCGuCGCGguucgaCGAGGcGGACGGCGa -3'
miRNA:   3'- aCGuGCGC-GCGC------GCUUUaUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 159313 0.67 0.971529
Target:  5'- cGC-CGCGuCGCGguucgaCGAGGcGGACGGCGa -3'
miRNA:   3'- aCGuGCGC-GCGC------GCUUUaUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 59977 0.67 0.971529
Target:  5'- aGcCACGCgGCGguggcCGCGAGcgAGACGGCc -3'
miRNA:   3'- aC-GUGCG-CGC-----GCGCUUuaUCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 159540 0.67 0.971529
Target:  5'- gGCGCGCGauccCGCGCGAGcuc-ACGACu -3'
miRNA:   3'- aCGUGCGC----GCGCGCUUuaucUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 52879 0.67 0.971529
Target:  5'- -aCACGCGCGaGCGAG--GGGCuGCGu -3'
miRNA:   3'- acGUGCGCGCgCGCUUuaUCUGuUGC- -5'
24729 3' -52.1 NC_005264.1 + 74680 0.67 0.971529
Target:  5'- aGCAC-CGCGUacaGCGGAAaccUAGuCAACGa -3'
miRNA:   3'- aCGUGcGCGCG---CGCUUU---AUCuGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 83689 0.67 0.974037
Target:  5'- gGC-CGCGCGUGUaguacacGAAAUGcgguGGCGGCGg -3'
miRNA:   3'- aCGuGCGCGCGCG-------CUUUAU----CUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 79399 0.67 0.974305
Target:  5'- cGC-CGCGgGCGUGGcg-AGGCcGCGg -3'
miRNA:   3'- aCGuGCGCgCGCGCUuuaUCUGuUGC- -5'
24729 3' -52.1 NC_005264.1 + 129002 0.67 0.974305
Target:  5'- cUGC-CGCgGCGCGCaggGGAAUAGcuACAGCc -3'
miRNA:   3'- -ACGuGCG-CGCGCG---CUUUAUC--UGUUGc -5'
24729 3' -52.1 NC_005264.1 + 23219 0.67 0.974305
Target:  5'- gUGC-CGC-CGCGCGAGuuguUGGAUuACGu -3'
miRNA:   3'- -ACGuGCGcGCGCGCUUu---AUCUGuUGC- -5'
24729 3' -52.1 NC_005264.1 + 146005 0.67 0.974305
Target:  5'- -cUACgGCGUGCGCGuuAUGGGCucggGCGa -3'
miRNA:   3'- acGUG-CGCGCGCGCuuUAUCUGu---UGC- -5'
24729 3' -52.1 NC_005264.1 + 72761 0.67 0.974305
Target:  5'- cGUgACGCGUGCGCc--GUAG-CGACGg -3'
miRNA:   3'- aCG-UGCGCGCGCGcuuUAUCuGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 47913 0.67 0.974305
Target:  5'- cGCACGUGUGCccGCGGAGccuuauCGACGg -3'
miRNA:   3'- aCGUGCGCGCG--CGCUUUaucu--GUUGC- -5'
24729 3' -52.1 NC_005264.1 + 78589 0.67 0.974305
Target:  5'- aGCaACGCaGCGCGUGuccacgcGGUAGGCAagcucGCGg -3'
miRNA:   3'- aCG-UGCG-CGCGCGCu------UUAUCUGU-----UGC- -5'
24729 3' -52.1 NC_005264.1 + 123100 0.67 0.975359
Target:  5'- cGCACGUGCGCucCGggGgcaucgaguacuacuUGGcCAACGg -3'
miRNA:   3'- aCGUGCGCGCGc-GCuuU---------------AUCuGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 138336 0.67 0.976631
Target:  5'- --gGCGCGUGCGCGAca-AGGCGcccgaacGCGa -3'
miRNA:   3'- acgUGCGCGCGCGCUuuaUCUGU-------UGC- -5'
24729 3' -52.1 NC_005264.1 + 95975 0.67 0.97688
Target:  5'- cUGCucuC-CGCGCGCGAucuAUuuucgcgucGGGCGACGg -3'
miRNA:   3'- -ACGu--GcGCGCGCGCUu--UA---------UCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 136653 0.67 0.97688
Target:  5'- aGCcuCGaCGCGCGUGGAGUAaaACAAUGg -3'
miRNA:   3'- aCGu-GC-GCGCGCGCUUUAUc-UGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 53613 0.67 0.97688
Target:  5'- aGgACGCGCgGUGgGAGAUGGGaGACa -3'
miRNA:   3'- aCgUGCGCG-CGCgCUUUAUCUgUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.