miRNA display CGI


Results 61 - 80 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24729 3' -52.1 NC_005264.1 + 47913 0.67 0.974305
Target:  5'- cGCACGUGUGCccGCGGAGccuuauCGACGg -3'
miRNA:   3'- aCGUGCGCGCG--CGCUUUaucu--GUUGC- -5'
24729 3' -52.1 NC_005264.1 + 72761 0.67 0.974305
Target:  5'- cGUgACGCGUGCGCc--GUAG-CGACGg -3'
miRNA:   3'- aCG-UGCGCGCGCGcuuUAUCuGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 129002 0.67 0.974305
Target:  5'- cUGC-CGCgGCGCGCaggGGAAUAGcuACAGCc -3'
miRNA:   3'- -ACGuGCG-CGCGCG---CUUUAUC--UGUUGc -5'
24729 3' -52.1 NC_005264.1 + 23219 0.67 0.974305
Target:  5'- gUGC-CGC-CGCGCGAGuuguUGGAUuACGu -3'
miRNA:   3'- -ACGuGCGcGCGCGCUUu---AUCUGuUGC- -5'
24729 3' -52.1 NC_005264.1 + 78589 0.67 0.974305
Target:  5'- aGCaACGCaGCGCGUGuccacgcGGUAGGCAagcucGCGg -3'
miRNA:   3'- aCG-UGCG-CGCGCGCu------UUAUCUGU-----UGC- -5'
24729 3' -52.1 NC_005264.1 + 79399 0.67 0.974305
Target:  5'- cGC-CGCGgGCGUGGcg-AGGCcGCGg -3'
miRNA:   3'- aCGuGCGCgCGCGCUuuaUCUGuUGC- -5'
24729 3' -52.1 NC_005264.1 + 83689 0.67 0.974037
Target:  5'- gGC-CGCGCGUGUaguacacGAAAUGcgguGGCGGCGg -3'
miRNA:   3'- aCGuGCGCGCGCG-------CUUUAU----CUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 159540 0.67 0.971529
Target:  5'- gGCGCGCGauccCGCGCGAGcuc-ACGACu -3'
miRNA:   3'- aCGUGCGC----GCGCGCUUuaucUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 74680 0.67 0.971529
Target:  5'- aGCAC-CGCGUacaGCGGAAaccUAGuCAACGa -3'
miRNA:   3'- aCGUGcGCGCG---CGCUUU---AUCuGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 40286 0.67 0.971529
Target:  5'- cGC-CGCGuCGCGguucgaCGAGGcGGACGGCGa -3'
miRNA:   3'- aCGuGCGC-GCGC------GCUUUaUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 59977 0.67 0.971529
Target:  5'- aGcCACGCgGCGguggcCGCGAGcgAGACGGCc -3'
miRNA:   3'- aC-GUGCG-CGC-----GCGCUUuaUCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 52879 0.67 0.971529
Target:  5'- -aCACGCGCGaGCGAG--GGGCuGCGu -3'
miRNA:   3'- acGUGCGCGCgCGCUUuaUCUGuUGC- -5'
24729 3' -52.1 NC_005264.1 + 159313 0.67 0.971529
Target:  5'- cGC-CGCGuCGCGguucgaCGAGGcGGACGGCGa -3'
miRNA:   3'- aCGuGCGC-GCGC------GCUUUaUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 154961 0.67 0.968542
Target:  5'- cGUACGCGCGC---AGAUGcGCAGCGa -3'
miRNA:   3'- aCGUGCGCGCGcgcUUUAUcUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 107212 0.67 0.968542
Target:  5'- gGCG-GCGCGCGCGGuu--GGCAuuCGg -3'
miRNA:   3'- aCGUgCGCGCGCGCUuuauCUGUu-GC- -5'
24729 3' -52.1 NC_005264.1 + 110259 0.67 0.968542
Target:  5'- -cCACGUaGCGCGCG---UAGGCAGCc -3'
miRNA:   3'- acGUGCG-CGCGCGCuuuAUCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 36259 0.67 0.968542
Target:  5'- aGCugGCGCGaucuGCcGAAgaGUGGACcACGu -3'
miRNA:   3'- aCGugCGCGCg---CG-CUU--UAUCUGuUGC- -5'
24729 3' -52.1 NC_005264.1 + 46588 0.67 0.968232
Target:  5'- cGCGCGUGCGgaggcucugucccUGCGggGcgaGGACGGCu -3'
miRNA:   3'- aCGUGCGCGC-------------GCGCuuUa--UCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 44530 0.68 0.96534
Target:  5'- cGCuACGaCGCGCGCGAGuacaucaccgAGACGucaaACGc -3'
miRNA:   3'- aCG-UGC-GCGCGCGCUUua--------UCUGU----UGC- -5'
24729 3' -52.1 NC_005264.1 + 66848 0.68 0.96534
Target:  5'- cGCcguCGCcCGaCGCGAAAUAGAUcGCGc -3'
miRNA:   3'- aCGu--GCGcGC-GCGCUUUAUCUGuUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.