miRNA display CGI


Results 81 - 100 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24729 3' -52.1 NC_005264.1 + 138214 0.68 0.96534
Target:  5'- aGCAUGCGCuGCGCGGu---GACcaauCGg -3'
miRNA:   3'- aCGUGCGCG-CGCGCUuuauCUGuu--GC- -5'
24729 3' -52.1 NC_005264.1 + 4325 0.68 0.963312
Target:  5'- gGCAgGUGCGCgaaagguagcuuaucGCGAuaGAUAGuCGGCGg -3'
miRNA:   3'- aCGUgCGCGCG---------------CGCU--UUAUCuGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 62576 0.68 0.961915
Target:  5'- cUGCGCGgauCGauaaaauugacCGCGCGAAGUAG-CGGCGc -3'
miRNA:   3'- -ACGUGC---GC-----------GCGCGCUUUAUCuGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 154923 0.68 0.961915
Target:  5'- gUGgACGCGCGCGUugcuagccaGAGcGUGGGgGACGu -3'
miRNA:   3'- -ACgUGCGCGCGCG---------CUU-UAUCUgUUGC- -5'
24729 3' -52.1 NC_005264.1 + 96892 0.68 0.961915
Target:  5'- gGCAUgGCgGCGCGCGAGGgc-GCGGCa -3'
miRNA:   3'- aCGUG-CG-CGCGCGCUUUaucUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 116267 0.68 0.959751
Target:  5'- cGCACGCGCgacuuggaagccgugGCGCGGGcggcuacggcuGUGGccuuCGACGg -3'
miRNA:   3'- aCGUGCGCG---------------CGCGCUU-----------UAUCu---GUUGC- -5'
24729 3' -52.1 NC_005264.1 + 20818 0.68 0.958262
Target:  5'- aUGCACGCcaauCGCGCG-----GACGGCGa -3'
miRNA:   3'- -ACGUGCGc---GCGCGCuuuauCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 93350 0.68 0.957884
Target:  5'- gGCACGCGUGUauggauaugugcgGCGAAugGGGCGAg- -3'
miRNA:   3'- aCGUGCGCGCG-------------CGCUUuaUCUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 117289 0.68 0.956349
Target:  5'- cGUACGCGUGCGCGAugccgcucuccgcguGCGACu -3'
miRNA:   3'- aCGUGCGCGCGCGCUuuauc----------UGUUGc -5'
24729 3' -52.1 NC_005264.1 + 97436 0.68 0.954376
Target:  5'- cUGCGgGCGcCGcCGCGGaucuGAUAGACGuaGCGc -3'
miRNA:   3'- -ACGUgCGC-GC-GCGCU----UUAUCUGU--UGC- -5'
24729 3' -52.1 NC_005264.1 + 120781 0.68 0.954376
Target:  5'- cGcCACGCGC-CGCGGgcaacgcgauugGAUAGGCcGCGu -3'
miRNA:   3'- aC-GUGCGCGcGCGCU------------UUAUCUGuUGC- -5'
24729 3' -52.1 NC_005264.1 + 81796 0.68 0.954376
Target:  5'- -cCACGCGC-CaGUGAgGGUAGACGGCGg -3'
miRNA:   3'- acGUGCGCGcG-CGCU-UUAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 12969 0.68 0.954376
Target:  5'- gGCGCGCGC-CGCcGAc---GACGACGc -3'
miRNA:   3'- aCGUGCGCGcGCG-CUuuauCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 26792 0.68 0.953571
Target:  5'- cUGCACGCGgGCuuccacgaggaGAAGUGGGCcGCGc -3'
miRNA:   3'- -ACGUGCGCgCGcg---------CUUUAUCUGuUGC- -5'
24729 3' -52.1 NC_005264.1 + 129594 0.68 0.951931
Target:  5'- cUGCAgGCGCugcgGCGCGGcggcgaagcuucucgAGUAGACGcCGa -3'
miRNA:   3'- -ACGUgCGCG----CGCGCU---------------UUAUCUGUuGC- -5'
24729 3' -52.1 NC_005264.1 + 143075 0.68 0.950253
Target:  5'- aGCAUGCGUgucacaaucgcgGCGCGAugcuggGGGCAcgGCGa -3'
miRNA:   3'- aCGUGCGCG------------CGCGCUuua---UCUGU--UGC- -5'
24729 3' -52.1 NC_005264.1 + 154135 0.68 0.950253
Target:  5'- gGcCACGCGCGCGCaGAGcgAGuucuuCAAgGg -3'
miRNA:   3'- aC-GUGCGCGCGCG-CUUuaUCu----GUUgC- -5'
24729 3' -52.1 NC_005264.1 + 97215 0.68 0.949827
Target:  5'- gUGCGCGCGCGgguacccacgagcCGCGAAcgcaGCAGCa -3'
miRNA:   3'- -ACGUGCGCGC-------------GCGCUUuaucUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 114300 0.69 0.945888
Target:  5'- gGCgACGgGgGCGCGcg--GGACGACGc -3'
miRNA:   3'- aCG-UGCgCgCGCGCuuuaUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 96985 0.69 0.945888
Target:  5'- gUGCGCGUuCGCGUGGGAaGGGCGuauCGu -3'
miRNA:   3'- -ACGUGCGcGCGCGCUUUaUCUGUu--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.