Results 101 - 120 of 194 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24729 | 3' | -52.1 | NC_005264.1 | + | 114300 | 0.69 | 0.945888 |
Target: 5'- gGCgACGgGgGCGCGcg--GGACGACGc -3' miRNA: 3'- aCG-UGCgCgCGCGCuuuaUCUGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 132892 | 0.69 | 0.943152 |
Target: 5'- gGCAUGCuGUGaGCGAAggcugcccugcguuaAUGGACAACGc -3' miRNA: 3'- aCGUGCG-CGCgCGCUU---------------UAUCUGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 19484 | 0.69 | 0.941279 |
Target: 5'- aUGCugACGCGCaccUGCGAGGUuccagcugccAGACGACGa -3' miRNA: 3'- -ACG--UGCGCGc--GCGCUUUA----------UCUGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 49240 | 0.69 | 0.941279 |
Target: 5'- aUGCACGaGUGCGCGGcAGUuggcgaguGACAGCu -3' miRNA: 3'- -ACGUGCgCGCGCGCU-UUAu-------CUGUUGc -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 95336 | 0.69 | 0.941279 |
Target: 5'- cGC-CGgGCGcCGCGAAAcGGACucgGCGg -3' miRNA: 3'- aCGuGCgCGC-GCGCUUUaUCUGu--UGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 130442 | 0.69 | 0.941279 |
Target: 5'- aGCcgAUGCGCGCGUGGAGgagcUGGuuuguCGACGa -3' miRNA: 3'- aCG--UGCGCGCGCGCUUU----AUCu----GUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 101923 | 0.69 | 0.941279 |
Target: 5'- aGCAaaaUG-GCGCGCGAAAcuGGCGGCGu -3' miRNA: 3'- aCGU---GCgCGCGCGCUUUauCUGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 120198 | 0.69 | 0.941279 |
Target: 5'- cUGC-CG-GCGCGCGAugggGGUAcGCAGCGg -3' miRNA: 3'- -ACGuGCgCGCGCGCU----UUAUcUGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 95731 | 0.69 | 0.941279 |
Target: 5'- aGCAaGCGCGgGCGcuggAGACGGCc -3' miRNA: 3'- aCGUgCGCGCgCGCuuuaUCUGUUGc -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 54058 | 0.69 | 0.941279 |
Target: 5'- cGCaACGCGUGCGCGAuucgcaAGAU-ACGc -3' miRNA: 3'- aCG-UGCGCGCGCGCUuua---UCUGuUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 1171 | 0.69 | 0.941279 |
Target: 5'- cUGC-CG-GCGCGCGAugggGGUAcGCAGCGg -3' miRNA: 3'- -ACGuGCgCGCGCGCU----UUAUcUGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 62483 | 0.69 | 0.941279 |
Target: 5'- cGCGuCGUGCGCGCGuccucuACGGCGu -3' miRNA: 3'- aCGU-GCGCGCGCGCuuuaucUGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 121370 | 0.69 | 0.936423 |
Target: 5'- cGCACGUaCGCacacGCGGAAUGGAUgguuAGCGa -3' miRNA: 3'- aCGUGCGcGCG----CGCUUUAUCUG----UUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 110845 | 0.69 | 0.936423 |
Target: 5'- cGCucCGCGCGCGaCGuccgcAAUAGcuACAGCGa -3' miRNA: 3'- aCGu-GCGCGCGC-GCu----UUAUC--UGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 21261 | 0.69 | 0.936423 |
Target: 5'- gUGCGCGC-CGCG-GAGGUGG-UAACGc -3' miRNA: 3'- -ACGUGCGcGCGCgCUUUAUCuGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 155238 | 0.69 | 0.931319 |
Target: 5'- cGCAUGCGCGCagaccagagcccGCGAGGUuuagGGGCGGa- -3' miRNA: 3'- aCGUGCGCGCG------------CGCUUUA----UCUGUUgc -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 21720 | 0.69 | 0.931319 |
Target: 5'- gGC-CGUGCGCGCaGGAGUAGAgGu-- -3' miRNA: 3'- aCGuGCGCGCGCG-CUUUAUCUgUugc -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 36211 | 0.69 | 0.931319 |
Target: 5'- cGCAUGCGCGCagaccagagcccGCGAGGUuuagGGGCGGa- -3' miRNA: 3'- aCGUGCGCGCG------------CGCUUUA----UCUGUUgc -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 18942 | 0.69 | 0.931319 |
Target: 5'- aUGCGucaGCGCagauGgGCGAAAUGGGCcGCGg -3' miRNA: 3'- -ACGUg--CGCG----CgCGCUUUAUCUGuUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 152535 | 0.69 | 0.925965 |
Target: 5'- gUGCGCGuCGCuGCGCccGGUAGGCGAg- -3' miRNA: 3'- -ACGUGC-GCG-CGCGcuUUAUCUGUUgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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