miRNA display CGI


Results 41 - 60 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24729 3' -52.1 NC_005264.1 + 36211 0.69 0.931319
Target:  5'- cGCAUGCGCGCagaccagagcccGCGAGGUuuagGGGCGGa- -3'
miRNA:   3'- aCGUGCGCGCG------------CGCUUUA----UCUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 36259 0.67 0.968542
Target:  5'- aGCugGCGCGaucuGCcGAAgaGUGGACcACGu -3'
miRNA:   3'- aCGugCGCGCg---CG-CUU--UAUCUGuUGC- -5'
24729 3' -52.1 NC_005264.1 + 36546 0.72 0.825971
Target:  5'- gGC-CGCGCGCcCGAAAgcGGCAugGc -3'
miRNA:   3'- aCGuGCGCGCGcGCUUUauCUGUugC- -5'
24729 3' -52.1 NC_005264.1 + 36820 0.74 0.751638
Target:  5'- cGCAgGCgagGCGCgGCGAAgaucGUAGACAGCa -3'
miRNA:   3'- aCGUgCG---CGCG-CGCUU----UAUCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 37565 0.66 0.988525
Target:  5'- aGCGCGcCGC-CGCGGA--GGGCGAa- -3'
miRNA:   3'- aCGUGC-GCGcGCGCUUuaUCUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 37662 0.74 0.71153
Target:  5'- gUGCACGCGaUGCGCGAc--GGGCGcGCGg -3'
miRNA:   3'- -ACGUGCGC-GCGCGCUuuaUCUGU-UGC- -5'
24729 3' -52.1 NC_005264.1 + 37857 0.66 0.988525
Target:  5'- aGCGCGuCGCGaCGCGc---AGACAAa- -3'
miRNA:   3'- aCGUGC-GCGC-GCGCuuuaUCUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 40280 0.66 0.985311
Target:  5'- gGCGCuGCGUgacguuugucGUGUGAAagcugcgcGUAGACGGCGa -3'
miRNA:   3'- aCGUG-CGCG----------CGCGCUU--------UAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 40286 0.67 0.971529
Target:  5'- cGC-CGCGuCGCGguucgaCGAGGcGGACGGCGa -3'
miRNA:   3'- aCGuGCGC-GCGC------GCUUUaUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 43667 0.71 0.881577
Target:  5'- gGCGCGCuGCGCGCcGgcGUuaAGGCGGCc -3'
miRNA:   3'- aCGUGCG-CGCGCG-CuuUA--UCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 44273 0.66 0.985311
Target:  5'- cGuCACGC-CGCGCGGAugAGAUcaccgAGCGg -3'
miRNA:   3'- aC-GUGCGcGCGCGCUUuaUCUG-----UUGC- -5'
24729 3' -52.1 NC_005264.1 + 44530 0.68 0.96534
Target:  5'- cGCuACGaCGCGCGCGAGuacaucaccgAGACGucaaACGc -3'
miRNA:   3'- aCG-UGC-GCGCGCGCUUua--------UCUGU----UGC- -5'
24729 3' -52.1 NC_005264.1 + 44944 0.7 0.902062
Target:  5'- gGCccguUGCGCGCGUGAcucccuucguGGUAGAgCGGCGg -3'
miRNA:   3'- aCGu---GCGCGCGCGCU----------UUAUCU-GUUGC- -5'
24729 3' -52.1 NC_005264.1 + 45341 0.66 0.989912
Target:  5'- cGCGC-CGCGCcCGAGAcgAGGCGAa- -3'
miRNA:   3'- aCGUGcGCGCGcGCUUUa-UCUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 45682 0.66 0.986995
Target:  5'- aGCACGUG-GCGCGAucccgggGGAaaaCAACa -3'
miRNA:   3'- aCGUGCGCgCGCGCUuua----UCU---GUUGc -5'
24729 3' -52.1 NC_005264.1 + 45769 0.77 0.586814
Target:  5'- cUGCGCGgGgCGCGCGGAGUGGGgAGuCGa -3'
miRNA:   3'- -ACGUGCgC-GCGCGCUUUAUCUgUU-GC- -5'
24729 3' -52.1 NC_005264.1 + 46588 0.67 0.968232
Target:  5'- cGCGCGUGCGgaggcucugucccUGCGggGcgaGGACGGCu -3'
miRNA:   3'- aCGUGCGCGC-------------GCGCuuUa--UCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 47913 0.67 0.974305
Target:  5'- cGCACGUGUGCccGCGGAGccuuauCGACGg -3'
miRNA:   3'- aCGUGCGCGCG--CGCUUUaucu--GUUGC- -5'
24729 3' -52.1 NC_005264.1 + 48576 0.72 0.842892
Target:  5'- aUGcCACGaCGCGCuucGCGG--UGGACAACGa -3'
miRNA:   3'- -AC-GUGC-GCGCG---CGCUuuAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 48707 0.66 0.986995
Target:  5'- cGguCGCuCGCGgGAGAUgAGGCGGCc -3'
miRNA:   3'- aCguGCGcGCGCgCUUUA-UCUGUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.