Results 81 - 100 of 194 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24729 | 3' | -52.1 | NC_005264.1 | + | 67260 | 0.74 | 0.731764 |
Target: 5'- cGCuaaaGCGCGCuGUGguAUAGACGACGc -3' miRNA: 3'- aCGug--CGCGCG-CGCuuUAUCUGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 68614 | 0.66 | 0.989912 |
Target: 5'- gGcCGCGUaGCGCaucguagcaacGCGugGUAGGCGACGa -3' miRNA: 3'- aC-GUGCG-CGCG-----------CGCuuUAUCUGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 72761 | 0.67 | 0.974305 |
Target: 5'- cGUgACGCGUGCGCc--GUAG-CGACGg -3' miRNA: 3'- aCG-UGCGCGCGCGcuuUAUCuGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 73366 | 0.69 | 0.925965 |
Target: 5'- aGCGCGCcuuucuuugucuGCG-GCGAAAUGGuagcGCGGCGg -3' miRNA: 3'- aCGUGCG------------CGCgCGCUUUAUC----UGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 73835 | 0.67 | 0.97926 |
Target: 5'- aUGCGCGaGCuGCGCGAuucagcAUAGcCAACa -3' miRNA: 3'- -ACGUGCgCG-CGCGCUu-----UAUCuGUUGc -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 73887 | 0.75 | 0.680673 |
Target: 5'- gUGCuAUGCGCGCGaCGAGAaAGACGuCGa -3' miRNA: 3'- -ACG-UGCGCGCGC-GCUUUaUCUGUuGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 74299 | 0.66 | 0.983467 |
Target: 5'- aGCgGCGgucugGCGCGCGgcAUGGcCAACGa -3' miRNA: 3'- aCG-UGCg----CGCGCGCuuUAUCuGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 74680 | 0.67 | 0.971529 |
Target: 5'- aGCAC-CGCGUacaGCGGAAaccUAGuCAACGa -3' miRNA: 3'- aCGUGcGCGCG---CGCUUU---AUCuGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 77001 | 0.72 | 0.820748 |
Target: 5'- gUGCGCGCaagacccgguacugaGCGCGCGcuucuuGGUcacAGACAGCGa -3' miRNA: 3'- -ACGUGCG---------------CGCGCGCu-----UUA---UCUGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 77976 | 0.66 | 0.985311 |
Target: 5'- gGCGC-CGCGCGUaccGGAGcGGGCGAUa -3' miRNA: 3'- aCGUGcGCGCGCG---CUUUaUCUGUUGc -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 78589 | 0.67 | 0.974305 |
Target: 5'- aGCaACGCaGCGCGUGuccacgcGGUAGGCAagcucGCGg -3' miRNA: 3'- aCG-UGCG-CGCGCGCu------UUAUCUGU-----UGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 78687 | 0.72 | 0.80651 |
Target: 5'- gGCGCGCGCGCuGCGAccacuucccgGGGCucGCGa -3' miRNA: 3'- aCGUGCGCGCG-CGCUuua-------UCUGu-UGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 78958 | 0.74 | 0.71153 |
Target: 5'- gGCAgGUGUGCGCGAAGUucGGCA-CGg -3' miRNA: 3'- aCGUgCGCGCGCGCUUUAu-CUGUuGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 79399 | 0.67 | 0.974305 |
Target: 5'- cGC-CGCGgGCGUGGcg-AGGCcGCGg -3' miRNA: 3'- aCGuGCGCgCGCGCUuuaUCUGuUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 81796 | 0.68 | 0.954376 |
Target: 5'- -cCACGCGC-CaGUGAgGGUAGACGGCGg -3' miRNA: 3'- acGUGCGCGcG-CGCU-UUAUCUGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 83193 | 0.7 | 0.914509 |
Target: 5'- gGCAgGCGCgGCGCGAAcuaugcgcuuuuAUGGGCcguuGCGc -3' miRNA: 3'- aCGUgCGCG-CGCGCUU------------UAUCUGu---UGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 83689 | 0.67 | 0.974037 |
Target: 5'- gGC-CGCGCGUGUaguacacGAAAUGcgguGGCGGCGg -3' miRNA: 3'- aCGuGCGCGCGCG-------CUUUAU----CUGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 84166 | 0.66 | 0.989912 |
Target: 5'- aGCGCGCGCGC-CGGAccuGuuuacuucuGCGGCGu -3' miRNA: 3'- aCGUGCGCGCGcGCUUuauC---------UGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 84894 | 0.67 | 0.97688 |
Target: 5'- aGCGgGC-CGCGCaGGAcgGGAgGGCGg -3' miRNA: 3'- aCGUgCGcGCGCG-CUUuaUCUgUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 87161 | 0.71 | 0.891403 |
Target: 5'- aGCAUGCGCGCcGCGGuuucgcgguuuacccAAUcuGGCGACGc -3' miRNA: 3'- aCGUGCGCGCG-CGCU---------------UUAu-CUGUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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