miRNA display CGI


Results 101 - 120 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24729 3' -52.1 NC_005264.1 + 87640 0.69 0.925965
Target:  5'- aUGCAgcCGCGUgggGCGCGGGAccUGGcgGCAACGg -3'
miRNA:   3'- -ACGU--GCGCG---CGCGCUUU--AUC--UGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 88949 0.73 0.761415
Target:  5'- gGCACGCcUGCuGCGAGAgucGGCGACGg -3'
miRNA:   3'- aCGUGCGcGCG-CGCUUUau-CUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 93350 0.68 0.957884
Target:  5'- gGCACGCGUGUauggauaugugcgGCGAAugGGGCGAg- -3'
miRNA:   3'- aCGUGCGCGCG-------------CGCUUuaUCUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 93842 0.66 0.989912
Target:  5'- gGUugGcCGUGCGCGcAAUAauGCGGCGg -3'
miRNA:   3'- aCGugC-GCGCGCGCuUUAUc-UGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 93937 0.69 0.945888
Target:  5'- cGCcacauuCGCGCGCaGCGGAguGUGGAaAGCGa -3'
miRNA:   3'- aCGu-----GCGCGCG-CGCUU--UAUCUgUUGC- -5'
24729 3' -52.1 NC_005264.1 + 94412 0.66 0.985311
Target:  5'- cGCgGCGCGgacUGCGCGAucgcuGACGugGg -3'
miRNA:   3'- aCG-UGCGC---GCGCGCUuuau-CUGUugC- -5'
24729 3' -52.1 NC_005264.1 + 95336 0.69 0.941279
Target:  5'- cGC-CGgGCGcCGCGAAAcGGACucgGCGg -3'
miRNA:   3'- aCGuGCgCGC-GCGCUUUaUCUGu--UGC- -5'
24729 3' -52.1 NC_005264.1 + 95731 0.69 0.941279
Target:  5'- aGCAaGCGCGgGCGcuggAGACGGCc -3'
miRNA:   3'- aCGUgCGCGCgCGCuuuaUCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 95975 0.67 0.97688
Target:  5'- cUGCucuC-CGCGCGCGAucuAUuuucgcgucGGGCGACGg -3'
miRNA:   3'- -ACGu--GcGCGCGCGCUu--UA---------UCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 96892 0.68 0.961915
Target:  5'- gGCAUgGCgGCGCGCGAGGgc-GCGGCa -3'
miRNA:   3'- aCGUG-CG-CGCGCGCUUUaucUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 96985 0.69 0.945888
Target:  5'- gUGCGCGUuCGCGUGGGAaGGGCGuauCGu -3'
miRNA:   3'- -ACGUGCGcGCGCGCUUUaUCUGUu--GC- -5'
24729 3' -52.1 NC_005264.1 + 97215 0.68 0.949827
Target:  5'- gUGCGCGCGCGgguacccacgagcCGCGAAcgcaGCAGCa -3'
miRNA:   3'- -ACGUGCGCGC-------------GCGCUUuaucUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 97436 0.68 0.954376
Target:  5'- cUGCGgGCGcCGcCGCGGaucuGAUAGACGuaGCGc -3'
miRNA:   3'- -ACGUgCGC-GC-GCGCU----UUAUCUGU--UGC- -5'
24729 3' -52.1 NC_005264.1 + 99026 0.67 0.97926
Target:  5'- aGCugGUcgaGCGCGCGGcagaAAUcGugGACGc -3'
miRNA:   3'- aCGugCG---CGCGCGCU----UUAuCugUUGC- -5'
24729 3' -52.1 NC_005264.1 + 99596 0.7 0.914509
Target:  5'- gGCAUGCuGgGCGCuucGAUGGACAugGc -3'
miRNA:   3'- aCGUGCG-CgCGCGcu-UUAUCUGUugC- -5'
24729 3' -52.1 NC_005264.1 + 99737 0.71 0.866757
Target:  5'- -aUACGCGUGCGCacGAGGUAGGCcuuuccgcGACGg -3'
miRNA:   3'- acGUGCGCGCGCG--CUUUAUCUG--------UUGC- -5'
24729 3' -52.1 NC_005264.1 + 99977 0.66 0.981453
Target:  5'- gGCcaaGCGCcuCGUGGAcgAGGCGACGa -3'
miRNA:   3'- aCGug-CGCGc-GCGCUUuaUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 100197 0.72 0.808314
Target:  5'- cGguCGCGUGCuGCGcu-UGGACGGCGg -3'
miRNA:   3'- aCguGCGCGCG-CGCuuuAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 100936 0.77 0.545638
Target:  5'- aGCGCGCGC-CGUGA--UAGACGGCa -3'
miRNA:   3'- aCGUGCGCGcGCGCUuuAUCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 101007 0.66 0.985134
Target:  5'- cGUACGCgGCGCagGCGAGccAGGCAcugcccgGCGa -3'
miRNA:   3'- aCGUGCG-CGCG--CGCUUuaUCUGU-------UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.