miRNA display CGI


Results 21 - 40 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24729 3' -52.1 NC_005264.1 + 149431 0.66 0.983467
Target:  5'- cGguCGCGCGCcgguGCGGAG-AGcuGCGGCGg -3'
miRNA:   3'- aCguGCGCGCG----CGCUUUaUC--UGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 148305 0.66 0.981453
Target:  5'- cGCGCGCGUGCGCGccGGUGuuCGuAUGg -3'
miRNA:   3'- aCGUGCGCGCGCGCu-UUAUcuGU-UGC- -5'
24729 3' -52.1 NC_005264.1 + 147536 0.67 0.977855
Target:  5'- aGCGauacggaaucuuuccCGCG-GCGCGAAGUGGccgccgacguguGCGACGg -3'
miRNA:   3'- aCGU---------------GCGCgCGCGCUUUAUC------------UGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 146081 0.72 0.808314
Target:  5'- aGCGCGCcccCGCGCGGGucuUGGugGACu -3'
miRNA:   3'- aCGUGCGc--GCGCGCUUu--AUCugUUGc -5'
24729 3' -52.1 NC_005264.1 + 146005 0.67 0.974305
Target:  5'- -cUACgGCGUGCGCGuuAUGGGCucggGCGa -3'
miRNA:   3'- acGUG-CGCGCGCGCuuUAUCUGu---UGC- -5'
24729 3' -52.1 NC_005264.1 + 144992 0.77 0.576451
Target:  5'- cGCGgucgaacaGCGCGCGCGAGAUGGAgGAUc -3'
miRNA:   3'- aCGUg-------CGCGCGCGCUUUAUCUgUUGc -5'
24729 3' -52.1 NC_005264.1 + 143075 0.68 0.950253
Target:  5'- aGCAUGCGUgucacaaucgcgGCGCGAugcuggGGGCAcgGCGa -3'
miRNA:   3'- aCGUGCGCG------------CGCGCUuua---UCUGU--UGC- -5'
24729 3' -52.1 NC_005264.1 + 142744 0.71 0.866757
Target:  5'- gGCuauACGCGCGUGgGAGAcaUGGACAAg- -3'
miRNA:   3'- aCG---UGCGCGCGCgCUUU--AUCUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 139568 1.09 0.007426
Target:  5'- cUGCACGCGCGCGCGAAAUAGACAACGu -3'
miRNA:   3'- -ACGUGCGCGCGCGCUUUAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 138439 0.71 0.874281
Target:  5'- cGCGC-CGCGCGCuuacuUGGACGACc -3'
miRNA:   3'- aCGUGcGCGCGCGcuuu-AUCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 138336 0.67 0.976631
Target:  5'- --gGCGCGUGCGCGAca-AGGCGcccgaacGCGa -3'
miRNA:   3'- acgUGCGCGCGCGCUuuaUCUGU-------UGC- -5'
24729 3' -52.1 NC_005264.1 + 138214 0.68 0.96534
Target:  5'- aGCAUGCGCuGCGCGGu---GACcaauCGg -3'
miRNA:   3'- aCGUGCGCG-CGCGCUuuauCUGuu--GC- -5'
24729 3' -52.1 NC_005264.1 + 136653 0.67 0.97688
Target:  5'- aGCcuCGaCGCGCGUGGAGUAaaACAAUGg -3'
miRNA:   3'- aCGu-GC-GCGCGCGCUUUAUc-UGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 134805 0.66 0.988525
Target:  5'- gGCGuCGCGCGCGcCGGA--AGACc--- -3'
miRNA:   3'- aCGU-GCGCGCGC-GCUUuaUCUGuugc -5'
24729 3' -52.1 NC_005264.1 + 132892 0.69 0.943152
Target:  5'- gGCAUGCuGUGaGCGAAggcugcccugcguuaAUGGACAACGc -3'
miRNA:   3'- aCGUGCG-CGCgCGCUU---------------UAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 131612 0.74 0.71153
Target:  5'- cGCGCguggGCGCGCGCGGAGaAGAacaGAUGg -3'
miRNA:   3'- aCGUG----CGCGCGCGCUUUaUCUg--UUGC- -5'
24729 3' -52.1 NC_005264.1 + 131135 0.71 0.874281
Target:  5'- aGUACGCcccGCGCGCGAccuuuGGcGGGCAGCc -3'
miRNA:   3'- aCGUGCG---CGCGCGCU-----UUaUCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 130442 0.69 0.941279
Target:  5'- aGCcgAUGCGCGCGUGGAGgagcUGGuuuguCGACGa -3'
miRNA:   3'- aCG--UGCGCGCGCGCUUU----AUCu----GUUGC- -5'
24729 3' -52.1 NC_005264.1 + 130265 0.74 0.741751
Target:  5'- gGCGCGgGUGCGCGAcGUugcGGCGGCu -3'
miRNA:   3'- aCGUGCgCGCGCGCUuUAu--CUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 129594 0.68 0.951931
Target:  5'- cUGCAgGCGCugcgGCGCGGcggcgaagcuucucgAGUAGACGcCGa -3'
miRNA:   3'- -ACGUgCGCG----CGCGCU---------------UUAUCUGUuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.