miRNA display CGI


Results 61 - 80 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24729 3' -52.1 NC_005264.1 + 114300 0.69 0.945888
Target:  5'- gGCgACGgGgGCGCGcg--GGACGACGc -3'
miRNA:   3'- aCG-UGCgCgCGCGCuuuaUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 113976 0.66 0.989912
Target:  5'- gGCAC-CG-GCGaGAGAUGGAgCAGCGg -3'
miRNA:   3'- aCGUGcGCgCGCgCUUUAUCU-GUUGC- -5'
24729 3' -52.1 NC_005264.1 + 112286 0.73 0.78999
Target:  5'- cGCACGCGCGCGCc---UAGcuuCGACa -3'
miRNA:   3'- aCGUGCGCGCGCGcuuuAUCu--GUUGc -5'
24729 3' -52.1 NC_005264.1 + 112036 0.71 0.866757
Target:  5'- cUGCGCGCGCGC-CGAucc-GACAAg- -3'
miRNA:   3'- -ACGUGCGCGCGcGCUuuauCUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 111251 0.71 0.881577
Target:  5'- cUGCGCGUauGCGCGgGAAacucgaucGUcGGCAACGg -3'
miRNA:   3'- -ACGUGCG--CGCGCgCUU--------UAuCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 110845 0.69 0.936423
Target:  5'- cGCucCGCGCGCGaCGuccgcAAUAGcuACAGCGa -3'
miRNA:   3'- aCGu-GCGCGCGC-GCu----UUAUC--UGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 110259 0.67 0.968542
Target:  5'- -cCACGUaGCGCGCG---UAGGCAGCc -3'
miRNA:   3'- acGUGCG-CGCGCGCuuuAUCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 109854 0.75 0.701302
Target:  5'- uUGCcCGCGaGCGCGAgcuAGUGGACAgaGCGg -3'
miRNA:   3'- -ACGuGCGCgCGCGCU---UUAUCUGU--UGC- -5'
24729 3' -52.1 NC_005264.1 + 109618 0.66 0.986995
Target:  5'- aGCAaaugGCGUGgGCGggGggcGCGACGg -3'
miRNA:   3'- aCGUg---CGCGCgCGCuuUaucUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 107212 0.67 0.968542
Target:  5'- gGCG-GCGCGCGCGGuu--GGCAuuCGg -3'
miRNA:   3'- aCGUgCGCGCGCGCUuuauCUGUu-GC- -5'
24729 3' -52.1 NC_005264.1 + 104363 0.71 0.850249
Target:  5'- cGCAUGCGUuaaugucGCGCGGcaGAUAGGCuGGCGc -3'
miRNA:   3'- aCGUGCGCG-------CGCGCU--UUAUCUG-UUGC- -5'
24729 3' -52.1 NC_005264.1 + 104083 0.73 0.78999
Target:  5'- -cCGCGCGUGCGCcucuGAUAGcGCAGCGg -3'
miRNA:   3'- acGUGCGCGCGCGcu--UUAUC-UGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 101923 0.69 0.941279
Target:  5'- aGCAaaaUG-GCGCGCGAAAcuGGCGGCGu -3'
miRNA:   3'- aCGU---GCgCGCGCGCUUUauCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 101161 0.66 0.981453
Target:  5'- gGCAC---UGUGCGAGAUAGGCGAgGa -3'
miRNA:   3'- aCGUGcgcGCGCGCUUUAUCUGUUgC- -5'
24729 3' -52.1 NC_005264.1 + 101007 0.66 0.985134
Target:  5'- cGUACGCgGCGCagGCGAGccAGGCAcugcccgGCGa -3'
miRNA:   3'- aCGUGCG-CGCG--CGCUUuaUCUGU-------UGC- -5'
24729 3' -52.1 NC_005264.1 + 100936 0.77 0.545638
Target:  5'- aGCGCGCGC-CGUGA--UAGACGGCa -3'
miRNA:   3'- aCGUGCGCGcGCGCUuuAUCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 100197 0.72 0.808314
Target:  5'- cGguCGCGUGCuGCGcu-UGGACGGCGg -3'
miRNA:   3'- aCguGCGCGCG-CGCuuuAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 99977 0.66 0.981453
Target:  5'- gGCcaaGCGCcuCGUGGAcgAGGCGACGa -3'
miRNA:   3'- aCGug-CGCGc-GCGCUUuaUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 99737 0.71 0.866757
Target:  5'- -aUACGCGUGCGCacGAGGUAGGCcuuuccgcGACGg -3'
miRNA:   3'- acGUGCGCGCGCG--CUUUAUCUG--------UUGC- -5'
24729 3' -52.1 NC_005264.1 + 99596 0.7 0.914509
Target:  5'- gGCAUGCuGgGCGCuucGAUGGACAugGc -3'
miRNA:   3'- aCGUGCG-CgCGCGcu-UUAUCUGUugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.