Results 81 - 100 of 194 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24729 | 3' | -52.1 | NC_005264.1 | + | 99026 | 0.67 | 0.97926 |
Target: 5'- aGCugGUcgaGCGCGCGGcagaAAUcGugGACGc -3' miRNA: 3'- aCGugCG---CGCGCGCU----UUAuCugUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 97436 | 0.68 | 0.954376 |
Target: 5'- cUGCGgGCGcCGcCGCGGaucuGAUAGACGuaGCGc -3' miRNA: 3'- -ACGUgCGC-GC-GCGCU----UUAUCUGU--UGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 97215 | 0.68 | 0.949827 |
Target: 5'- gUGCGCGCGCGgguacccacgagcCGCGAAcgcaGCAGCa -3' miRNA: 3'- -ACGUGCGCGC-------------GCGCUUuaucUGUUGc -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 96985 | 0.69 | 0.945888 |
Target: 5'- gUGCGCGUuCGCGUGGGAaGGGCGuauCGu -3' miRNA: 3'- -ACGUGCGcGCGCGCUUUaUCUGUu--GC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 96892 | 0.68 | 0.961915 |
Target: 5'- gGCAUgGCgGCGCGCGAGGgc-GCGGCa -3' miRNA: 3'- aCGUG-CG-CGCGCGCUUUaucUGUUGc -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 95975 | 0.67 | 0.97688 |
Target: 5'- cUGCucuC-CGCGCGCGAucuAUuuucgcgucGGGCGACGg -3' miRNA: 3'- -ACGu--GcGCGCGCGCUu--UA---------UCUGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 95731 | 0.69 | 0.941279 |
Target: 5'- aGCAaGCGCGgGCGcuggAGACGGCc -3' miRNA: 3'- aCGUgCGCGCgCGCuuuaUCUGUUGc -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 95336 | 0.69 | 0.941279 |
Target: 5'- cGC-CGgGCGcCGCGAAAcGGACucgGCGg -3' miRNA: 3'- aCGuGCgCGC-GCGCUUUaUCUGu--UGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 94412 | 0.66 | 0.985311 |
Target: 5'- cGCgGCGCGgacUGCGCGAucgcuGACGugGg -3' miRNA: 3'- aCG-UGCGC---GCGCGCUuuau-CUGUugC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 93937 | 0.69 | 0.945888 |
Target: 5'- cGCcacauuCGCGCGCaGCGGAguGUGGAaAGCGa -3' miRNA: 3'- aCGu-----GCGCGCG-CGCUU--UAUCUgUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 93842 | 0.66 | 0.989912 |
Target: 5'- gGUugGcCGUGCGCGcAAUAauGCGGCGg -3' miRNA: 3'- aCGugC-GCGCGCGCuUUAUc-UGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 93350 | 0.68 | 0.957884 |
Target: 5'- gGCACGCGUGUauggauaugugcgGCGAAugGGGCGAg- -3' miRNA: 3'- aCGUGCGCGCG-------------CGCUUuaUCUGUUgc -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 88949 | 0.73 | 0.761415 |
Target: 5'- gGCACGCcUGCuGCGAGAgucGGCGACGg -3' miRNA: 3'- aCGUGCGcGCG-CGCUUUau-CUGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 87640 | 0.69 | 0.925965 |
Target: 5'- aUGCAgcCGCGUgggGCGCGGGAccUGGcgGCAACGg -3' miRNA: 3'- -ACGU--GCGCG---CGCGCUUU--AUC--UGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 87161 | 0.71 | 0.891403 |
Target: 5'- aGCAUGCGCGCcGCGGuuucgcgguuuacccAAUcuGGCGACGc -3' miRNA: 3'- aCGUGCGCGCG-CGCU---------------UUAu-CUGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 84894 | 0.67 | 0.97688 |
Target: 5'- aGCGgGC-CGCGCaGGAcgGGAgGGCGg -3' miRNA: 3'- aCGUgCGcGCGCG-CUUuaUCUgUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 84166 | 0.66 | 0.989912 |
Target: 5'- aGCGCGCGCGC-CGGAccuGuuuacuucuGCGGCGu -3' miRNA: 3'- aCGUGCGCGCGcGCUUuauC---------UGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 83689 | 0.67 | 0.974037 |
Target: 5'- gGC-CGCGCGUGUaguacacGAAAUGcgguGGCGGCGg -3' miRNA: 3'- aCGuGCGCGCGCG-------CUUUAU----CUGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 83193 | 0.7 | 0.914509 |
Target: 5'- gGCAgGCGCgGCGCGAAcuaugcgcuuuuAUGGGCcguuGCGc -3' miRNA: 3'- aCGUgCGCG-CGCGCUU------------UAUCUGu---UGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 81796 | 0.68 | 0.954376 |
Target: 5'- -cCACGCGC-CaGUGAgGGUAGACGGCGg -3' miRNA: 3'- acGUGCGCGcG-CGCU-UUAUCUGUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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