miRNA display CGI


Results 101 - 120 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24729 3' -52.1 NC_005264.1 + 79399 0.67 0.974305
Target:  5'- cGC-CGCGgGCGUGGcg-AGGCcGCGg -3'
miRNA:   3'- aCGuGCGCgCGCGCUuuaUCUGuUGC- -5'
24729 3' -52.1 NC_005264.1 + 78958 0.74 0.71153
Target:  5'- gGCAgGUGUGCGCGAAGUucGGCA-CGg -3'
miRNA:   3'- aCGUgCGCGCGCGCUUUAu-CUGUuGC- -5'
24729 3' -52.1 NC_005264.1 + 78687 0.72 0.80651
Target:  5'- gGCGCGCGCGCuGCGAccacuucccgGGGCucGCGa -3'
miRNA:   3'- aCGUGCGCGCG-CGCUuua-------UCUGu-UGC- -5'
24729 3' -52.1 NC_005264.1 + 78589 0.67 0.974305
Target:  5'- aGCaACGCaGCGCGUGuccacgcGGUAGGCAagcucGCGg -3'
miRNA:   3'- aCG-UGCG-CGCGCGCu------UUAUCUGU-----UGC- -5'
24729 3' -52.1 NC_005264.1 + 77976 0.66 0.985311
Target:  5'- gGCGC-CGCGCGUaccGGAGcGGGCGAUa -3'
miRNA:   3'- aCGUGcGCGCGCG---CUUUaUCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 77001 0.72 0.820748
Target:  5'- gUGCGCGCaagacccgguacugaGCGCGCGcuucuuGGUcacAGACAGCGa -3'
miRNA:   3'- -ACGUGCG---------------CGCGCGCu-----UUA---UCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 74680 0.67 0.971529
Target:  5'- aGCAC-CGCGUacaGCGGAAaccUAGuCAACGa -3'
miRNA:   3'- aCGUGcGCGCG---CGCUUU---AUCuGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 74299 0.66 0.983467
Target:  5'- aGCgGCGgucugGCGCGCGgcAUGGcCAACGa -3'
miRNA:   3'- aCG-UGCg----CGCGCGCuuUAUCuGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 73887 0.75 0.680673
Target:  5'- gUGCuAUGCGCGCGaCGAGAaAGACGuCGa -3'
miRNA:   3'- -ACG-UGCGCGCGC-GCUUUaUCUGUuGC- -5'
24729 3' -52.1 NC_005264.1 + 73835 0.67 0.97926
Target:  5'- aUGCGCGaGCuGCGCGAuucagcAUAGcCAACa -3'
miRNA:   3'- -ACGUGCgCG-CGCGCUu-----UAUCuGUUGc -5'
24729 3' -52.1 NC_005264.1 + 73366 0.69 0.925965
Target:  5'- aGCGCGCcuuucuuugucuGCG-GCGAAAUGGuagcGCGGCGg -3'
miRNA:   3'- aCGUGCG------------CGCgCGCUUUAUC----UGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 72761 0.67 0.974305
Target:  5'- cGUgACGCGUGCGCc--GUAG-CGACGg -3'
miRNA:   3'- aCG-UGCGCGCGCGcuuUAUCuGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 68614 0.66 0.989912
Target:  5'- gGcCGCGUaGCGCaucguagcaacGCGugGUAGGCGACGa -3'
miRNA:   3'- aC-GUGCG-CGCG-----------CGCuuUAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 67260 0.74 0.731764
Target:  5'- cGCuaaaGCGCGCuGUGguAUAGACGACGc -3'
miRNA:   3'- aCGug--CGCGCG-CGCuuUAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 66848 0.68 0.96534
Target:  5'- cGCcguCGCcCGaCGCGAAAUAGAUcGCGc -3'
miRNA:   3'- aCGu--GCGcGC-GCGCUUUAUCUGuUGC- -5'
24729 3' -52.1 NC_005264.1 + 64487 0.66 0.988525
Target:  5'- gGCAaGCGCGC-CGAGAgagucgccUGGACcGCGc -3'
miRNA:   3'- aCGUgCGCGCGcGCUUU--------AUCUGuUGC- -5'
24729 3' -52.1 NC_005264.1 + 62576 0.68 0.961915
Target:  5'- cUGCGCGgauCGauaaaauugacCGCGCGAAGUAG-CGGCGc -3'
miRNA:   3'- -ACGUGC---GC-----------GCGCGCUUUAUCuGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 62483 0.69 0.941279
Target:  5'- cGCGuCGUGCGCGCGuccucuACGGCGu -3'
miRNA:   3'- aCGU-GCGCGCGCGCuuuaucUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 59977 0.67 0.971529
Target:  5'- aGcCACGCgGCGguggcCGCGAGcgAGACGGCc -3'
miRNA:   3'- aC-GUGCG-CGC-----GCGCUUuaUCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 59703 0.66 0.989912
Target:  5'- uUGCGcCGCGCGCcGCGcc---GGCGGCu -3'
miRNA:   3'- -ACGU-GCGCGCG-CGCuuuauCUGUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.