miRNA display CGI


Results 41 - 60 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24729 3' -52.1 NC_005264.1 + 123289 0.7 0.920362
Target:  5'- gGCuuGC-CGCGCGGGAaccgcgGGGCGGCGg -3'
miRNA:   3'- aCGugCGcGCGCGCUUUa-----UCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 100197 0.72 0.808314
Target:  5'- cGguCGCGUGCuGCGcu-UGGACGGCGg -3'
miRNA:   3'- aCguGCGCGCG-CGCuuuAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 121915 0.77 0.545638
Target:  5'- gGCGCgGCGCG-GCGggGaGGGCGACGg -3'
miRNA:   3'- aCGUG-CGCGCgCGCuuUaUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 99596 0.7 0.914509
Target:  5'- gGCAUGCuGgGCGCuucGAUGGACAugGc -3'
miRNA:   3'- aCGUGCG-CgCGCGcu-UUAUCUGUugC- -5'
24729 3' -52.1 NC_005264.1 + 50565 0.78 0.515373
Target:  5'- gGCGCGCGCGUGCGGGA-AGcgcacGCGGCGc -3'
miRNA:   3'- aCGUGCGCGCGCGCUUUaUC-----UGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 110259 0.67 0.968542
Target:  5'- -cCACGUaGCGCGCG---UAGGCAGCc -3'
miRNA:   3'- acGUGCG-CGCGCGCuuuAUCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 144992 0.77 0.576451
Target:  5'- cGCGgucgaacaGCGCGCGCGAGAUGGAgGAUc -3'
miRNA:   3'- aCGUg-------CGCGCGCGCUUUAUCUgUUGc -5'
24729 3' -52.1 NC_005264.1 + 46588 0.67 0.968232
Target:  5'- cGCGCGUGCGgaggcucugucccUGCGggGcgaGGACGGCu -3'
miRNA:   3'- aCGUGCGCGC-------------GCGCuuUa--UCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 4325 0.68 0.963312
Target:  5'- gGCAgGUGCGCgaaagguagcuuaucGCGAuaGAUAGuCGGCGg -3'
miRNA:   3'- aCGUgCGCGCG---------------CGCU--UUAUCuGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 114300 0.69 0.945888
Target:  5'- gGCgACGgGgGCGCGcg--GGACGACGc -3'
miRNA:   3'- aCG-UGCgCgCGCGCuuuaUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 19484 0.69 0.941279
Target:  5'- aUGCugACGCGCaccUGCGAGGUuccagcugccAGACGACGa -3'
miRNA:   3'- -ACG--UGCGCGc--GCGCUUUA----------UCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 155238 0.69 0.931319
Target:  5'- cGCAUGCGCGCagaccagagcccGCGAGGUuuagGGGCGGa- -3'
miRNA:   3'- aCGUGCGCGCG------------CGCUUUA----UCUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 54417 0.69 0.925965
Target:  5'- uUGCGCG-GCGCGCcGAcuaGGGCGugGg -3'
miRNA:   3'- -ACGUGCgCGCGCG-CUuuaUCUGUugC- -5'
24729 3' -52.1 NC_005264.1 + 87161 0.71 0.891403
Target:  5'- aGCAUGCGCGCcGCGGuuucgcgguuuacccAAUcuGGCGACGc -3'
miRNA:   3'- aCGUGCGCGCG-CGCU---------------UUAu-CUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 118312 0.71 0.874281
Target:  5'- aUGUACuCGCGCGCGucGUAGcgguacgaguacACGACGg -3'
miRNA:   3'- -ACGUGcGCGCGCGCuuUAUC------------UGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 104363 0.71 0.850249
Target:  5'- cGCAUGCGUuaaugucGCGCGGcaGAUAGGCuGGCGc -3'
miRNA:   3'- aCGUGCGCG-------CGCGCU--UUAUCUG-UUGC- -5'
24729 3' -52.1 NC_005264.1 + 36546 0.72 0.825971
Target:  5'- gGC-CGCGCGCcCGAAAgcGGCAugGc -3'
miRNA:   3'- aCGuGCGCGCGcGCUUUauCUGUugC- -5'
24729 3' -52.1 NC_005264.1 + 149885 0.73 0.761415
Target:  5'- gGCgGCGCGC-CGCccGGUAGGCAACGg -3'
miRNA:   3'- aCG-UGCGCGcGCGcuUUAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 54203 0.74 0.741751
Target:  5'- gGUACGauuGCGCGgGGGAUacGGACGGCGg -3'
miRNA:   3'- aCGUGCg--CGCGCgCUUUA--UCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 73887 0.75 0.680673
Target:  5'- gUGCuAUGCGCGCGaCGAGAaAGACGuCGa -3'
miRNA:   3'- -ACG-UGCGCGCGC-GCUUUaUCUGUuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.