miRNA display CGI


Results 61 - 80 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24729 3' -52.1 NC_005264.1 + 54417 0.69 0.925965
Target:  5'- uUGCGCG-GCGCGCcGAcuaGGGCGugGg -3'
miRNA:   3'- -ACGUGCgCGCGCG-CUuuaUCUGUugC- -5'
24729 3' -52.1 NC_005264.1 + 110845 0.69 0.936423
Target:  5'- cGCucCGCGCGCGaCGuccgcAAUAGcuACAGCGa -3'
miRNA:   3'- aCGu-GCGCGCGC-GCu----UUAUC--UGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 45769 0.77 0.586814
Target:  5'- cUGCGCGgGgCGCGCGGAGUGGGgAGuCGa -3'
miRNA:   3'- -ACGUGCgC-GCGCGCUUUAUCUgUU-GC- -5'
24729 3' -52.1 NC_005264.1 + 78958 0.74 0.71153
Target:  5'- gGCAgGUGUGCGCGAAGUucGGCA-CGg -3'
miRNA:   3'- aCGUgCGCGCGCGCUUUAu-CUGUuGC- -5'
24729 3' -52.1 NC_005264.1 + 36820 0.74 0.751638
Target:  5'- cGCAgGCgagGCGCgGCGAAgaucGUAGACAGCa -3'
miRNA:   3'- aCGUgCG---CGCG-CGCUU----UAUCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 127110 0.73 0.78999
Target:  5'- gGCACGgGCG-GCGuAAAcagGGACAACGa -3'
miRNA:   3'- aCGUGCgCGCgCGC-UUUa--UCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 48576 0.72 0.842892
Target:  5'- aUGcCACGaCGCGCuucGCGG--UGGACAACGa -3'
miRNA:   3'- -AC-GUGC-GCGCG---CGCUuuAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 112036 0.71 0.866757
Target:  5'- cUGCGCGCGCGC-CGAucc-GACAAg- -3'
miRNA:   3'- -ACGUGCGCGCGcGCUuuauCUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 16542 0.71 0.881577
Target:  5'- aGCGCuuGCGCGUauuucaGCGcgGUGGGCGGCGc -3'
miRNA:   3'- aCGUG--CGCGCG------CGCuuUAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 28046 0.7 0.900111
Target:  5'- cGCGCGCgacgccggguaaaaGCGCGCGGAAgcGAacACGg -3'
miRNA:   3'- aCGUGCG--------------CGCGCGCUUUauCUguUGC- -5'
24729 3' -52.1 NC_005264.1 + 40280 0.66 0.985311
Target:  5'- gGCGCuGCGUgacguuugucGUGUGAAagcugcgcGUAGACGGCGa -3'
miRNA:   3'- aCGUG-CGCG----------CGCGCUU--------UAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 123113 0.66 0.983467
Target:  5'- uUGCACGgGCG-GCGucgcGGcACGACGg -3'
miRNA:   3'- -ACGUGCgCGCgCGCuuuaUC-UGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 132892 0.69 0.943152
Target:  5'- gGCAUGCuGUGaGCGAAggcugcccugcguuaAUGGACAACGc -3'
miRNA:   3'- aCGUGCG-CGCgCGCUU---------------UAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 97436 0.68 0.954376
Target:  5'- cUGCGgGCGcCGcCGCGGaucuGAUAGACGuaGCGc -3'
miRNA:   3'- -ACGUgCGC-GC-GCGCU----UUAUCUGU--UGC- -5'
24729 3' -52.1 NC_005264.1 + 46588 0.67 0.968232
Target:  5'- cGCGCGUGCGgaggcucugucccUGCGggGcgaGGACGGCu -3'
miRNA:   3'- aCGUGCGCGC-------------GCGCuuUa--UCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 110259 0.67 0.968542
Target:  5'- -cCACGUaGCGCGCG---UAGGCAGCc -3'
miRNA:   3'- acGUGCG-CGCGCGCuuuAUCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 83689 0.67 0.974037
Target:  5'- gGC-CGCGCGUGUaguacacGAAAUGcgguGGCGGCGg -3'
miRNA:   3'- aCGuGCGCGCGCG-------CUUUAU----CUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 47913 0.67 0.974305
Target:  5'- cGCACGUGUGCccGCGGAGccuuauCGACGg -3'
miRNA:   3'- aCGUGCGCGCG--CGCUUUaucu--GUUGC- -5'
24729 3' -52.1 NC_005264.1 + 73835 0.67 0.97926
Target:  5'- aUGCGCGaGCuGCGCGAuucagcAUAGcCAACa -3'
miRNA:   3'- -ACGUGCgCG-CGCGCUu-----UAUCuGUUGc -5'
24729 3' -52.1 NC_005264.1 + 16511 0.66 0.981453
Target:  5'- gGCGCGCaCGC-CGAGAgucaGGAUAGCu -3'
miRNA:   3'- aCGUGCGcGCGcGCUUUa---UCUGUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.