miRNA display CGI


Results 81 - 100 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24729 3' -52.1 NC_005264.1 + 97436 0.68 0.954376
Target:  5'- cUGCGgGCGcCGcCGCGGaucuGAUAGACGuaGCGc -3'
miRNA:   3'- -ACGUgCGC-GC-GCGCU----UUAUCUGU--UGC- -5'
24729 3' -52.1 NC_005264.1 + 66848 0.68 0.96534
Target:  5'- cGCcguCGCcCGaCGCGAAAUAGAUcGCGc -3'
miRNA:   3'- aCGu--GCGcGC-GCGCUUUAUCUGuUGC- -5'
24729 3' -52.1 NC_005264.1 + 107212 0.67 0.968542
Target:  5'- gGCG-GCGCGCGCGGuu--GGCAuuCGg -3'
miRNA:   3'- aCGUgCGCGCGCGCUuuauCUGUu-GC- -5'
24729 3' -52.1 NC_005264.1 + 159313 0.67 0.971529
Target:  5'- cGC-CGCGuCGCGguucgaCGAGGcGGACGGCGa -3'
miRNA:   3'- aCGuGCGC-GCGC------GCUUUaUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 23219 0.67 0.974305
Target:  5'- gUGC-CGC-CGCGCGAGuuguUGGAUuACGu -3'
miRNA:   3'- -ACGuGCGcGCGCGCUUu---AUCUGuUGC- -5'
24729 3' -52.1 NC_005264.1 + 115230 0.67 0.97926
Target:  5'- aUGUACGCGCcguucGCGCGAGucuccccCAACGc -3'
miRNA:   3'- -ACGUGCGCG-----CGCGCUUuaucu--GUUGC- -5'
24729 3' -52.1 NC_005264.1 + 49589 0.73 0.799231
Target:  5'- cGCACGC-CGCcgGCGAccaGGACGACGg -3'
miRNA:   3'- aCGUGCGcGCG--CGCUuuaUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 88949 0.73 0.761415
Target:  5'- gGCACGCcUGCuGCGAGAgucGGCGACGg -3'
miRNA:   3'- aCGUGCGcGCG-CGCUUUau-CUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 20221 0.75 0.670292
Target:  5'- gGCACGCauguggccccGCGCGUGAcgGGUGGGCAGgGg -3'
miRNA:   3'- aCGUGCG----------CGCGCGCU--UUAUCUGUUgC- -5'
24729 3' -52.1 NC_005264.1 + 150865 0.72 0.842892
Target:  5'- cGUGC-CGCGCGCGGca-AGACAugGg -3'
miRNA:   3'- aCGUGcGCGCGCGCUuuaUCUGUugC- -5'
24729 3' -52.1 NC_005264.1 + 142744 0.71 0.866757
Target:  5'- gGCuauACGCGCGUGgGAGAcaUGGACAAg- -3'
miRNA:   3'- aCG---UGCGCGCGCgCUUU--AUCUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 162693 0.71 0.881577
Target:  5'- gGCGCGCuGCGCGCcGgcGUuaAGGCGGCc -3'
miRNA:   3'- aCGUGCG-CGCGCG-CuuUA--UCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 121532 0.66 0.989912
Target:  5'- gGCcucGCGCGacuucaGCGCGGG--GGGCGACu -3'
miRNA:   3'- aCG---UGCGCg-----CGCGCUUuaUCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 156688 0.74 0.71153
Target:  5'- gUGCACGCGaUGCGCGAc--GGGCGcGCGg -3'
miRNA:   3'- -ACGUGCGC-GCGCGCUuuaUCUGU-UGC- -5'
24729 3' -52.1 NC_005264.1 + 123100 0.67 0.975359
Target:  5'- cGCACGUGCGCucCGggGgcaucgaguacuacuUGGcCAACGg -3'
miRNA:   3'- aCGUGCGCGCGc-GCuuU---------------AUCuGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 138336 0.67 0.976631
Target:  5'- --gGCGCGUGCGCGAca-AGGCGcccgaacGCGa -3'
miRNA:   3'- acgUGCGCGCGCGCUuuaUCUGU-------UGC- -5'
24729 3' -52.1 NC_005264.1 + 44273 0.66 0.985311
Target:  5'- cGuCACGC-CGCGCGGAugAGAUcaccgAGCGg -3'
miRNA:   3'- aC-GUGCGcGCGCGCUUuaUCUG-----UUGC- -5'
24729 3' -52.1 NC_005264.1 + 121370 0.69 0.936423
Target:  5'- cGCACGUaCGCacacGCGGAAUGGAUgguuAGCGa -3'
miRNA:   3'- aCGUGCGcGCG----CGCUUUAUCUG----UUGC- -5'
24729 3' -52.1 NC_005264.1 + 21261 0.69 0.936423
Target:  5'- gUGCGCGC-CGCG-GAGGUGG-UAACGc -3'
miRNA:   3'- -ACGUGCGcGCGCgCUUUAUCuGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 33508 0.69 0.925965
Target:  5'- gUGCGCGuCGCuGCGCccGGUAGGCGAg- -3'
miRNA:   3'- -ACGUGC-GCG-CGCGcuUUAUCUGUUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.