miRNA display CGI


Results 101 - 120 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24729 3' -52.1 NC_005264.1 + 36211 0.69 0.931319
Target:  5'- cGCAUGCGCGCagaccagagcccGCGAGGUuuagGGGCGGa- -3'
miRNA:   3'- aCGUGCGCGCG------------CGCUUUA----UCUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 130442 0.69 0.941279
Target:  5'- aGCcgAUGCGCGCGUGGAGgagcUGGuuuguCGACGa -3'
miRNA:   3'- aCG--UGCGCGCGCGCUUU----AUCu----GUUGC- -5'
24729 3' -52.1 NC_005264.1 + 121370 0.69 0.936423
Target:  5'- cGCACGUaCGCacacGCGGAAUGGAUgguuAGCGa -3'
miRNA:   3'- aCGUGCGcGCG----CGCUUUAUCUG----UUGC- -5'
24729 3' -52.1 NC_005264.1 + 1171 0.69 0.941279
Target:  5'- cUGC-CG-GCGCGCGAugggGGUAcGCAGCGg -3'
miRNA:   3'- -ACGuGCgCGCGCGCU----UUAUcUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 54058 0.69 0.941279
Target:  5'- cGCaACGCGUGCGCGAuucgcaAGAU-ACGc -3'
miRNA:   3'- aCG-UGCGCGCGCGCUuua---UCUGuUGC- -5'
24729 3' -52.1 NC_005264.1 + 51999 0.66 0.985311
Target:  5'- cGgACGuCGCGCGCGGA----GCGACc -3'
miRNA:   3'- aCgUGC-GCGCGCGCUUuaucUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 44273 0.66 0.985311
Target:  5'- cGuCACGC-CGCGCGGAugAGAUcaccgAGCGg -3'
miRNA:   3'- aC-GUGCGcGCGCGCUUuaUCUG-----UUGC- -5'
24729 3' -52.1 NC_005264.1 + 96985 0.69 0.945888
Target:  5'- gUGCGCGUuCGCGUGGGAaGGGCGuauCGu -3'
miRNA:   3'- -ACGUGCGcGCGCGCUUUaUCUGUu--GC- -5'
24729 3' -52.1 NC_005264.1 + 53613 0.67 0.97688
Target:  5'- aGgACGCGCgGUGgGAGAUGGGaGACa -3'
miRNA:   3'- aCgUGCGCG-CGCgCUUUAUCUgUUGc -5'
24729 3' -52.1 NC_005264.1 + 136653 0.67 0.97688
Target:  5'- aGCcuCGaCGCGCGUGGAGUAaaACAAUGg -3'
miRNA:   3'- aCGu-GC-GCGCGCGCUUUAUc-UGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 95975 0.67 0.97688
Target:  5'- cUGCucuC-CGCGCGCGAucuAUuuucgcgucGGGCGACGg -3'
miRNA:   3'- -ACGu--GcGCGCGCGCUu--UA---------UCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 21905 0.67 0.97926
Target:  5'- gGCG-GCGCGUGCGGucGUAGugcugucuuCAACGg -3'
miRNA:   3'- aCGUgCGCGCGCGCUu-UAUCu--------GUUGC- -5'
24729 3' -52.1 NC_005264.1 + 99026 0.67 0.97926
Target:  5'- aGCugGUcgaGCGCGCGGcagaAAUcGugGACGc -3'
miRNA:   3'- aCGugCG---CGCGCGCU----UUAuCugUUGC- -5'
24729 3' -52.1 NC_005264.1 + 21261 0.69 0.936423
Target:  5'- gUGCGCGC-CGCG-GAGGUGG-UAACGc -3'
miRNA:   3'- -ACGUGCGcGCGCgCUUUAUCuGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 123100 0.67 0.975359
Target:  5'- cGCACGUGCGCucCGggGgcaucgaguacuacuUGGcCAACGg -3'
miRNA:   3'- aCGUGCGCGCGc-GCuuU---------------AUCuGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 95731 0.69 0.941279
Target:  5'- aGCAaGCGCGgGCGcuggAGACGGCc -3'
miRNA:   3'- aCGUgCGCGCgCGCuuuaUCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 2889 0.77 0.545638
Target:  5'- gGCGCgGCGCG-GCGggGaGGGCGACGg -3'
miRNA:   3'- aCGUG-CGCGCgCGCuuUaUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 155264 0.81 0.352253
Target:  5'- cGCA-GCG-GCGCGggGUAGGCGGCGg -3'
miRNA:   3'- aCGUgCGCgCGCGCuuUAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 143075 0.68 0.950253
Target:  5'- aGCAUGCGUgucacaaucgcgGCGCGAugcuggGGGCAcgGCGa -3'
miRNA:   3'- aCGUGCGCG------------CGCGCUuua---UCUGU--UGC- -5'
24729 3' -52.1 NC_005264.1 + 97215 0.68 0.949827
Target:  5'- gUGCGCGCGCGgguacccacgagcCGCGAAcgcaGCAGCa -3'
miRNA:   3'- -ACGUGCGCGC-------------GCGCUUuaucUGUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.