miRNA display CGI


Results 121 - 140 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24729 3' -52.1 NC_005264.1 + 54058 0.69 0.941279
Target:  5'- cGCaACGCGUGCGCGAuucgcaAGAU-ACGc -3'
miRNA:   3'- aCG-UGCGCGCGCGCUuua---UCUGuUGC- -5'
24729 3' -52.1 NC_005264.1 + 1171 0.69 0.941279
Target:  5'- cUGC-CG-GCGCGCGAugggGGUAcGCAGCGg -3'
miRNA:   3'- -ACGuGCgCGCGCGCU----UUAUcUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 121370 0.69 0.936423
Target:  5'- cGCACGUaCGCacacGCGGAAUGGAUgguuAGCGa -3'
miRNA:   3'- aCGUGCGcGCG----CGCUUUAUCUG----UUGC- -5'
24729 3' -52.1 NC_005264.1 + 21261 0.69 0.936423
Target:  5'- gUGCGCGC-CGCG-GAGGUGG-UAACGc -3'
miRNA:   3'- -ACGUGCGcGCGCgCUUUAUCuGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 36211 0.69 0.931319
Target:  5'- cGCAUGCGCGCagaccagagcccGCGAGGUuuagGGGCGGa- -3'
miRNA:   3'- aCGUGCGCGCG------------CGCUUUA----UCUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 26792 0.68 0.953571
Target:  5'- cUGCACGCGgGCuuccacgaggaGAAGUGGGCcGCGc -3'
miRNA:   3'- -ACGUGCGCgCGcg---------CUUUAUCUGuUGC- -5'
24729 3' -52.1 NC_005264.1 + 12969 0.68 0.954376
Target:  5'- gGCGCGCGC-CGCcGAc---GACGACGc -3'
miRNA:   3'- aCGUGCGCGcGCG-CUuuauCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 155264 0.81 0.352253
Target:  5'- cGCA-GCG-GCGCGggGUAGGCGGCGg -3'
miRNA:   3'- aCGUgCGCgCGCGCuuUAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 2889 0.77 0.545638
Target:  5'- gGCGCgGCGCG-GCGggGaGGGCGACGg -3'
miRNA:   3'- aCGUG-CGCGCgCGCuuUaUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 100936 0.77 0.545638
Target:  5'- aGCGCGCGC-CGUGA--UAGACGGCa -3'
miRNA:   3'- aCGUGCGCGcGCGCUuuAUCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 159744 0.75 0.670292
Target:  5'- cUGCGCGCGaugGCaGaCGAAGUGGugGACGa -3'
miRNA:   3'- -ACGUGCGCg--CG-C-GCUUUAUCugUUGC- -5'
24729 3' -52.1 NC_005264.1 + 56927 0.75 0.691013
Target:  5'- cGUACGUGCGUgGCGcAcgGGGCGACGg -3'
miRNA:   3'- aCGUGCGCGCG-CGCuUuaUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 109854 0.75 0.701302
Target:  5'- uUGCcCGCGaGCGCGAgcuAGUGGACAgaGCGg -3'
miRNA:   3'- -ACGuGCGCgCGCGCU---UUAUCUGU--UGC- -5'
24729 3' -52.1 NC_005264.1 + 131612 0.74 0.71153
Target:  5'- cGCGCguggGCGCGCGCGGAGaAGAacaGAUGg -3'
miRNA:   3'- aCGUG----CGCGCGCGCUUUaUCUg--UUGC- -5'
24729 3' -52.1 NC_005264.1 + 67260 0.74 0.731764
Target:  5'- cGCuaaaGCGCGCuGUGguAUAGACGACGc -3'
miRNA:   3'- aCGug--CGCGCG-CGCuuUAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 130265 0.74 0.741751
Target:  5'- gGCGCGgGUGCGCGAcGUugcGGCGGCu -3'
miRNA:   3'- aCGUGCgCGCGCGCUuUAu--CUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 30859 0.73 0.761415
Target:  5'- gGCgGCGCGC-CGCccGGUAGGCAACGg -3'
miRNA:   3'- aCG-UGCGCGcGCGcuUUAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 8083 0.73 0.78999
Target:  5'- gGCACGgGCG-GCGuAAAcagGGACAACGa -3'
miRNA:   3'- aCGUGCgCGCgCGC-UUUa--UCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 95336 0.69 0.941279
Target:  5'- cGC-CGgGCGcCGCGAAAcGGACucgGCGg -3'
miRNA:   3'- aCGuGCgCGC-GCGCUUUaUCUGu--UGC- -5'
24729 3' -52.1 NC_005264.1 + 120781 0.68 0.954376
Target:  5'- cGcCACGCGC-CGCGGgcaacgcgauugGAUAGGCcGCGu -3'
miRNA:   3'- aC-GUGCGCGcGCGCU------------UUAUCUGuUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.