miRNA display CGI


Results 141 - 160 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24729 3' -52.1 NC_005264.1 + 37662 0.74 0.71153
Target:  5'- gUGCACGCGaUGCGCGAc--GGGCGcGCGg -3'
miRNA:   3'- -ACGUGCGC-GCGCGCUuuaUCUGU-UGC- -5'
24729 3' -52.1 NC_005264.1 + 109854 0.75 0.701302
Target:  5'- uUGCcCGCGaGCGCGAgcuAGUGGACAgaGCGg -3'
miRNA:   3'- -ACGuGCGCgCGCGCU---UUAUCUGU--UGC- -5'
24729 3' -52.1 NC_005264.1 + 56927 0.75 0.691013
Target:  5'- cGUACGUGCGUgGCGcAcgGGGCGACGg -3'
miRNA:   3'- aCGUGCGCGCG-CGCuUuaUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 159744 0.75 0.670292
Target:  5'- cUGCGCGCGaugGCaGaCGAAGUGGugGACGa -3'
miRNA:   3'- -ACGUGCGCg--CG-C-GCUUUAUCugUUGC- -5'
24729 3' -52.1 NC_005264.1 + 50816 0.72 0.808314
Target:  5'- gGCGCGCGCGCagguuuGCGu-GUAGACGugACa -3'
miRNA:   3'- aCGUGCGCGCG------CGCuuUAUCUGU--UGc -5'
24729 3' -52.1 NC_005264.1 + 146081 0.72 0.808314
Target:  5'- aGCGCGCcccCGCGCGGGucuUGGugGACu -3'
miRNA:   3'- aCGUGCGc--GCGCGCUUu--AUCugUUGc -5'
24729 3' -52.1 NC_005264.1 + 152980 0.72 0.81723
Target:  5'- uUGCGgucuccgGCGCGgGCGAggaggagaacugGAUAGACGACGa -3'
miRNA:   3'- -ACGUg------CGCGCgCGCU------------UUAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 96985 0.69 0.945888
Target:  5'- gUGCGCGUuCGCGUGGGAaGGGCGuauCGu -3'
miRNA:   3'- -ACGUGCGcGCGCGCUUUaUCUGUu--GC- -5'
24729 3' -52.1 NC_005264.1 + 101923 0.69 0.941279
Target:  5'- aGCAaaaUG-GCGCGCGAAAcuGGCGGCGu -3'
miRNA:   3'- aCGU---GCgCGCGCGCUUUauCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 95336 0.69 0.941279
Target:  5'- cGC-CGgGCGcCGCGAAAcGGACucgGCGg -3'
miRNA:   3'- aCGuGCgCGC-GCGCUUUaUCUGu--UGC- -5'
24729 3' -52.1 NC_005264.1 + 49240 0.69 0.941279
Target:  5'- aUGCACGaGUGCGCGGcAGUuggcgaguGACAGCu -3'
miRNA:   3'- -ACGUGCgCGCGCGCU-UUAu-------CUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 130442 0.69 0.941279
Target:  5'- aGCcgAUGCGCGCGUGGAGgagcUGGuuuguCGACGa -3'
miRNA:   3'- aCG--UGCGCGCGCGCUUU----AUCu----GUUGC- -5'
24729 3' -52.1 NC_005264.1 + 95731 0.69 0.941279
Target:  5'- aGCAaGCGCGgGCGcuggAGACGGCc -3'
miRNA:   3'- aCGUgCGCGCgCGCuuuaUCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 54058 0.69 0.941279
Target:  5'- cGCaACGCGUGCGCGAuucgcaAGAU-ACGc -3'
miRNA:   3'- aCG-UGCGCGCGCGCUuua---UCUGuUGC- -5'
24729 3' -52.1 NC_005264.1 + 1171 0.69 0.941279
Target:  5'- cUGC-CG-GCGCGCGAugggGGUAcGCAGCGg -3'
miRNA:   3'- -ACGuGCgCGCGCGCU----UUAUcUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 121370 0.69 0.936423
Target:  5'- cGCACGUaCGCacacGCGGAAUGGAUgguuAGCGa -3'
miRNA:   3'- aCGUGCGcGCG----CGCUUUAUCUG----UUGC- -5'
24729 3' -52.1 NC_005264.1 + 36211 0.69 0.931319
Target:  5'- cGCAUGCGCGCagaccagagcccGCGAGGUuuagGGGCGGa- -3'
miRNA:   3'- aCGUGCGCGCG------------CGCUUUA----UCUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 33508 0.69 0.925965
Target:  5'- gUGCGCGuCGCuGCGCccGGUAGGCGAg- -3'
miRNA:   3'- -ACGUGC-GCG-CGCGcuUUAUCUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 154184 0.71 0.851057
Target:  5'- aGCAUGCccgaauacuuCGCGCGAAacGUAGACGugGc -3'
miRNA:   3'- aCGUGCGc---------GCGCGCUU--UAUCUGUugC- -5'
24729 3' -52.1 NC_005264.1 + 31839 0.72 0.842892
Target:  5'- cGUGC-CGCGCGCGGca-AGACAugGg -3'
miRNA:   3'- aCGUGcGCGCGCGCUuuaUCUGUugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.