miRNA display CGI


Results 41 - 60 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24729 3' -52.1 NC_005264.1 + 14548 0.66 0.988525
Target:  5'- cGCACGCGCGCGgucuccaGAAucucccgccGGGCAAa- -3'
miRNA:   3'- aCGUGCGCGCGCg------CUUua-------UCUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 126554 0.66 0.988525
Target:  5'- gGCucuuCGCGC-CGCGA---AGACGugGu -3'
miRNA:   3'- aCGu---GCGCGcGCGCUuuaUCUGUugC- -5'
24729 3' -52.1 NC_005264.1 + 134805 0.66 0.988525
Target:  5'- gGCGuCGCGCGCGcCGGA--AGACc--- -3'
miRNA:   3'- aCGU-GCGCGCGC-GCUUuaUCUGuugc -5'
24729 3' -52.1 NC_005264.1 + 45341 0.66 0.989912
Target:  5'- cGCGC-CGCGCcCGAGAcgAGGCGAa- -3'
miRNA:   3'- aCGUGcGCGCGcGCUUUa-UCUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 2505 0.66 0.989912
Target:  5'- gGCcucGCGCGacuucaGCGCGGG--GGGCGACu -3'
miRNA:   3'- aCG---UGCGCg-----CGCGCUUuaUCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 44273 0.66 0.985311
Target:  5'- cGuCACGC-CGCGCGGAugAGAUcaccgAGCGg -3'
miRNA:   3'- aC-GUGCGcGCGCGCUUuaUCUG-----UUGC- -5'
24729 3' -52.1 NC_005264.1 + 101007 0.66 0.985134
Target:  5'- cGUACGCgGCGCagGCGAGccAGGCAcugcccgGCGa -3'
miRNA:   3'- aCGUGCG-CGCG--CGCUUuaUCUGU-------UGC- -5'
24729 3' -52.1 NC_005264.1 + 53613 0.67 0.97688
Target:  5'- aGgACGCGCgGUGgGAGAUGGGaGACa -3'
miRNA:   3'- aCgUGCGCG-CGCgCUUUAUCUgUUGc -5'
24729 3' -52.1 NC_005264.1 + 136653 0.67 0.97688
Target:  5'- aGCcuCGaCGCGCGUGGAGUAaaACAAUGg -3'
miRNA:   3'- aCGu-GC-GCGCGCGCUUUAUc-UGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 95975 0.67 0.97688
Target:  5'- cUGCucuC-CGCGCGCGAucuAUuuucgcgucGGGCGACGg -3'
miRNA:   3'- -ACGu--GcGCGCGCGCUu--UA---------UCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 21905 0.67 0.97926
Target:  5'- gGCG-GCGCGUGCGGucGUAGugcugucuuCAACGg -3'
miRNA:   3'- aCGUgCGCGCGCGCUu-UAUCu--------GUUGC- -5'
24729 3' -52.1 NC_005264.1 + 99026 0.67 0.97926
Target:  5'- aGCugGUcgaGCGCGCGGcagaAAUcGugGACGc -3'
miRNA:   3'- aCGugCG---CGCGCGCU----UUAuCugUUGC- -5'
24729 3' -52.1 NC_005264.1 + 160650 0.67 0.97926
Target:  5'- cGCAUGgGCGC-CGGcAAUggagGGGCAACGc -3'
miRNA:   3'- aCGUGCgCGCGcGCU-UUA----UCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 99977 0.66 0.981453
Target:  5'- gGCcaaGCGCcuCGUGGAcgAGGCGACGa -3'
miRNA:   3'- aCGug-CGCGc-GCGCUUuaUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 101161 0.66 0.981453
Target:  5'- gGCAC---UGUGCGAGAUAGGCGAgGa -3'
miRNA:   3'- aCGUGcgcGCGCGCUUUAUCUGUUgC- -5'
24729 3' -52.1 NC_005264.1 + 4086 0.66 0.983467
Target:  5'- uUGCACGgGCG-GCGucgcGGcACGACGg -3'
miRNA:   3'- -ACGUGCgCGCgCGCuuuaUC-UGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 74299 0.66 0.983467
Target:  5'- aGCgGCGgucugGCGCGCGgcAUGGcCAACGa -3'
miRNA:   3'- aCG-UGCg----CGCGCGCuuUAUCuGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 29283 0.66 0.983467
Target:  5'- cUGUGCGCGgGCGCGugccu--CGACGu -3'
miRNA:   3'- -ACGUGCGCgCGCGCuuuaucuGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 30404 0.66 0.983467
Target:  5'- cGguCGCGCGCcgguGCGGAG-AGcuGCGGCGg -3'
miRNA:   3'- aCguGCGCGCG----CGCUUUaUC--UGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 156687 0.66 0.983467
Target:  5'- uUGUACaGCcCGCGCGAGAcccaGGACGgGCGg -3'
miRNA:   3'- -ACGUG-CGcGCGCGCUUUa---UCUGU-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.